Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte1g00479 ATGCAGCATCAGAGGCTGAAGCAGCAGCAACAGCAAGCTTTGATGCAACAGGCTCTCATGCAACAACAGTCTATCTATCACCCTGGTTTATTAGCTCCTCCTCAGATTGAGCCAATTCCAAGTGGAAATTTGCCTCCTGGTTTCGACCCTAGTTCATGCCGAAGTGTGTACATTGGGAACATCCATCCACAGGTGACTGAACCACTTCTGCAAGAGGTTTTCCAAAGTACTGGCCTGATAGAAGGGTGTAAACTGATCAGGAAGGAGAAGTCATCCTATGGGTTTGTTCACTACTACGACCGTCGCAGTGCAGCTATTGCAATATTGTCTCTTAATGGGAGGCATCTGTTTGGACAGCCCATCAAAGTCAACTGGGCATATGCAAGTGGTCAGAGGGAAGACACATCAGGTCATTATAACATTTTTGTCGGGGATCTCAGTCCTGAGGTTACTGATGCTACATTGTTCGCTTGCTTTTCTGTATATCCCAGTTGTTCGTAA 501 0.4611 MQHQRLKQQQQQALMQQALMQQQSIYHPGLLAPPQIEPIPSGNLPPGFDPSSCRSVYIGNIHPQVTEPLLQEVFQSTGLIEGCKLIRKEKSSYGFVHYYDRRSAAIAILSLNGRHLFGQPIKVNWAYASGQREDTSGHYNIFVGDLSPEVTDATLFACFSVYPSCS* 167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte1g00479 166 SMART rrm1_1 55 124 IPR000504 GO:0003723
Pte1g00479 166 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 54 128 IPR000504 GO:0003723
Pte1g00479 166 Gene3D - 1 140 IPR012677 -
Pte1g00479 166 SUPERFAMILY RNA-binding domain, RBD 51 163 IPR035979 GO:0003676
Pte1g00479 166 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 42 166 - -
Pte1g00479 166 CDD RRM1_PUB1 56 126 - -
Pte1g00479 166 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 56 122 IPR000504 GO:0003723
Pte1g00479 166 FunFam oligouridylate-binding protein 1B-like isoform X2 1 136 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte1g00479 Pte-Chr1 5522764 5525468 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte1g00479 55 165 Eukaryotic Initiation Factors Gene Family AT2G36660 32.773 2.60e-10 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte1g00479 K13201 - twl:119982884 298.901