Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte1g00478 ATGGCCAAATCTCTATACATGGGTGACAGCAGAAGATCCATGAAAGCACATGCAGAGAAACCAACTTTCACTCAGACTTGCAAACTCCTCAGCCAGTTCATGAAGGAGAAGCGTTTTGCTATTGATTCAAGCAAAGGACCTCCAGCAATATCGGAACATAAAGCAAAGACGAGGAACTTGTTGACAACCATGGAAAACTCAGATGATGCTTCTAAAGCGATTGCTGCAGTTATGAATTGCGTTCCACGATTTATTCAGAACTCTACGAACAACAATGAATCTGATTCCAGTGGAAAAGATCAGTTGACCATATTTTACTGTGGGAAAGTCTTAGTTTTAAATGACTTTCCAGCAGAAAGTGCCACTGAGGTCATGGAAATGGCAAGCAAGCTGAGTTCTAACGTTTCCGCAATGGAAAAAGCTCAAACCAGTACAGCTCCTGTTCCTCCTGAAACCAAGAAGATGGCTATGCTTGCAATCAACAGCACTGAACAACAGTGTCCTACATCAGAATCTGAAGCTAATTTGAAGATTGCAGGGAGAGCTTCCCTTCATAAATTCTTCGAGAAAAGAAAAGAAAGGGTCACAGCAAGAGGGCCGTACCCTTTGATGACTGCTTCCATTTCCAAGGCAAGCGATGAACCCAGTTCAGGGGCTTCAGATGCGCTTGACCTCACGCTGTAG 684 0.4371 MAKSLYMGDSRRSMKAHAEKPTFTQTCKLLSQFMKEKRFAIDSSKGPPAISEHKAKTRNLLTTMENSDDASKAIAAVMNCVPRFIQNSTNNNESDSSGKDQLTIFYCGKVLVLNDFPAESATEVMEMASKLSSNVSAMEKAQTSTAPVPPETKKMAMLAINSTEQQCPTSESEANLKIAGRASLHKFFEKRKERVTARGPYPLMTASISKASDEPSSGASDALDLTL* 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte1g00478 227 MobiDBLite consensus disorder prediction 209 227 - -
Pte1g00478 227 Pfam tify domain 97 129 IPR010399 -
Pte1g00478 227 MobiDBLite consensus disorder prediction 206 227 - -
Pte1g00478 227 MobiDBLite consensus disorder prediction 1 20 - -
Pte1g00478 227 SMART tify_2 95 130 IPR010399 -
Pte1g00478 227 ProSiteProfiles Tify domain profile. 95 130 IPR010399 -
Pte1g00478 227 Pfam Jas motif 178 201 IPR018467 -
Pte1g00478 227 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 16 210 IPR040390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte1g00478 Pte-Chr1 5518341 5520099 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte1g00478 1 225 Tify Gene Family AT1G19180 33.846 1.23e-21 88.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Pte1g00478 tify 8.6e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte1g00478 K13464 - qsa:O6P43_018427 166.007
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte1g00478 1 5518341 5520099 Pte1g00478 1 5518341 5520099 RCT