Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte1g00462 ATGAGTAATTGGTTAGGCTTTTCATTGACTCCACACCTGAGGATTGATGAAGCGTTTGAAAGAGAAAACCAAGTAGTCCAGCATAACCATCACCACCACCATCATCATCATCATGATGCACCAGGTTTGCCCCCTTACCTGTCAGTCATGCCTTTGCGCTCTGATGGCTCTCTTTCTGTTGCTGACTGCTTCAAACGCTTTACTGGACCTCAAGACTGGAGATATGACAATACAATATCTGCAGCAAACACAGCAGAAGGAAGTCCCAAGCTTGAAGATTTCATGGGATGTTACTCAAGCTCTCCTCCGCCTTCTGCAGTTGAAACTAACTACTGCCAAAGTTCAAAGCAAGATAAGGACCACGAGAGAAGTACTGTAGCCAATATCAATGTTAATGCACCTGCAGGTTTTAGCCGCTCAAACTCAGAAGTAGAAACTGGAGAAAACGTTGCCACAAACCCAACTTGTGCACTCCAATCCTTTCATAACTTTGATGGTAACCCACTTGCGCTAGTCCCTAGCAATGGCATGTACAAATCATGGCTAGGCCAGACTCAGTTTTTGGATGGAAAGCCATCCGGTGAAGTTCATGGGTGCAATGCTCAATCACTGTCTCTGACCATGAGCCCCAGTAACGGTGTGGGTGCAACTTCGGCTTTGCAAGTGGCAGACCCTCGTAAAAGGTCGGTTAGTAAATCGCTTACTAGAGAACCTGTGCCTCGGAAGTCCATAGATACTTTTGGACAGAGAACATCTCAGTATCGAGGAGTTACAAGGCATAGGTGGACAGGAAGATATGAGGCTCATTTGTGGGATAACAGCTGCAGAAAGGAAGGGCAGACAAGGAAAGGAAGACAAGGTGGCTACGATAAGGAAGAAAAAGCAGCAAGGGCTTATGATTTAGCTGCACTCAAGTATTGGGGTCCAACAACTCACATAAATTTCCCTCTAAGTACTTATGAGAAAGAACTTGAAGAAATGAAGCACATGAGCAGACAGGAATTTGTTGCTCATTTAAGAAGGAAAAGCAGTGGTTTTTCAAGAGGAGCATCCGTATACAGAGGAGTAACAAGACATCACCAACATGGAAGATGGCAAGCTAGAATCGGAAGAGTTGCAGGAAACAAGGACTTGTACCTTGGTACCTTCAGTACTCAAGAGGAAGCTGCTGAAGCATATGACATAGCGGCAATAAAGTTTAGAGGAACAAGTGCCGTGACCAACTTTGATATAAGTAGGTATGATGTCAAGAGAATCTGCTCAAGCTCAACTCTTATTGCAGGTGACTTGGCCAAGAAGTCACCTAAAGGCTCAGTCAGTGGTCTGATTGAGGACTACAACTCTTGTGCTTCATCTACATCATCTCAACCCCTTTTGGCTATAACAAATGGTGAGAATGATGACTTGACAAATATGGTATGGAATGCCAATGCCGTAGATGAAGATCAACAGATTGGGAACGGTGATACTAGTAGGATTGGTGATCAGGTTGATCCAAGCAGCAAAAACTCATCAACCCCACAAAGTCCAAAATGTTCTGGAGCATTGACCAATGAATTTGGTGTTGTTGGTGGAAGTGAGTCTGCTGAGTATGGTCATTCTTACTTTCTGGAAGGACCAAAGTATAACGAGGGAAACCATGAGAGTGACAACATGAGCAGCCATAGCAATTTAGGCATGGTTCATCAAGTCCCTATGTTTGCATTATGGAATGACTGA 1719 0.4421 MSNWLGFSLTPHLRIDEAFERENQVVQHNHHHHHHHHHDAPGLPPYLSVMPLRSDGSLSVADCFKRFTGPQDWRYDNTISAANTAEGSPKLEDFMGCYSSSPPPSAVETNYCQSSKQDKDHERSTVANINVNAPAGFSRSNSEVETGENVATNPTCALQSFHNFDGNPLALVPSNGMYKSWLGQTQFLDGKPSGEVHGCNAQSLSLTMSPSNGVGATSALQVADPRKRSVSKSLTREPVPRKSIDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCRKEGQTRKGRQGGYDKEEKAARAYDLAALKYWGPTTHINFPLSTYEKELEEMKHMSRQEFVAHLRRKSSGFSRGASVYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGTSAVTNFDISRYDVKRICSSSTLIAGDLAKKSPKGSVSGLIEDYNSCASSTSSQPLLAITNGENDDLTNMVWNANAVDEDQQIGNGDTSRIGDQVDPSSKNSSTPQSPKCSGALTNEFGVVGGSESAEYGHSYFLEGPKYNEGNHESDNMSSHSNLGMVHQVPMFALWND* 573
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte1g00462 572 ProSiteProfiles AP2/ERF domain profile. 253 316 IPR001471 GO:0003700|GO:0006355
Pte1g00462 572 Gene3D AP2/ERF domain 252 318 IPR036955 GO:0003700|GO:0006355
Pte1g00462 572 Gene3D AP2/ERF domain 352 412 IPR036955 GO:0003700|GO:0006355
Pte1g00462 572 FunFam AP2-like ethylene-responsive transcription factor 351 412 - -
Pte1g00462 572 SMART rav1_2 253 322 IPR001471 GO:0003700|GO:0006355
Pte1g00462 572 SMART rav1_2 352 416 IPR001471 GO:0003700|GO:0006355
Pte1g00462 572 FunFam AP2-like ethylene-responsive transcription factor ANT 252 318 - -
Pte1g00462 572 SUPERFAMILY DNA-binding domain 351 412 IPR016177 GO:0003677
Pte1g00462 572 CDD AP2 252 318 IPR001471 GO:0003700|GO:0006355
Pte1g00462 572 MobiDBLite consensus disorder prediction 478 515 - -
Pte1g00462 572 ProSiteProfiles AP2/ERF domain profile. 352 410 IPR001471 GO:0003700|GO:0006355
Pte1g00462 572 Pfam AP2 domain 351 402 IPR001471 GO:0003700|GO:0006355
Pte1g00462 572 Pfam AP2 domain 253 308 IPR001471 GO:0003700|GO:0006355
Pte1g00462 572 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 86 491 - -
Pte1g00462 572 CDD AP2 351 412 IPR001471 GO:0003700|GO:0006355
Pte1g00462 572 MobiDBLite consensus disorder prediction 478 517 - -
Pte1g00462 572 MobiDBLite consensus disorder prediction 218 238 - -
Pte1g00462 572 SUPERFAMILY DNA-binding domain 252 318 IPR016177 GO:0003677
Pte1g00462 572 PRINTS Ethylene responsive element binding protein signature 254 265 IPR001471 GO:0003700|GO:0006355
Pte1g00462 572 PRINTS Ethylene responsive element binding protein signature 392 412 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte1g00462 Pte-Chr1 5325037 5328441 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte1g00462 1 441 AP2-EREBP Transcription Factor Family AT1G72570 49.683 9.52e-136 399
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-AP2 Pte1g00462 AP2 1.2e-09 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte1g00462 K09285 - gmx:100809762 754.207
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte1g00462 1 5325037 5328441 Pte1g00462 1 5325037 5328441 RCT