LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pte1g00439	ATGGGTGGCTCCGGAAAATGGCTAAAATCTCTAATAACTCTGAGAAAGCCTACCAAAAATGACATCGAGAAAGTAAATGATAAGGGGAAGAAGAAGTGGAGGCTATGGAGAAGCTCTTCTGAAGGGTTTGGATCGTCTTTGAAGAATGTGAAGAAAGGGCATGAGGAGGTGGCATCAGAAAAGTCTGATTCTTCGTTTTTGGTTGATGAGGTGTTCATAGCTGCCATGGCGGCTGTTGTACGAGCTCCACCTAAGGATTTCATGCTGATCAAGAAAGAGTGGGCTGCCATTCGCATCCAGGCTGCTTTTAGAGCCTTTTTGGCTAGACAAGCCTTGAAGGCACTGAAGGCAGTTGTAAGGCTACAAGCAATATTTCGAGGCAGACAGGTTAGGAAGCAAGCAGCTGTGACCCTAAGATGTATGCAAGCTCTCGTTAGAGTTCAGGCTTCAGTCAGGGCTAGAAGTGCGACAATGTCTCCATGTAGGCAAGCAGCTGAAACATTACTAAAGAAGCATCAAGATGAATCTGATCCATTGAAGCAAGCAGAGCGAGGGTGGTGTGACATTCCAGGAACTGCTGAGGAAGTTAGAGCAAAGCTACATATCAGGCAAGAAGCAGCAATTAAGAGGGAAAAGATAATGGCTTATTCCCATTCACAAAAGCAATCAAGAATAAGTGCTAGTCCAAAATCCAAAACGACCAAGGCGACGTCTTTGCTCAAGCACCATAGTCATGATAATAGCTGGTTAGACAGTTGGATAGCAGCCAAGCCATTGGGAAATAGGTTGCTGGAAAAGATGCATGTTGGTCCAAGAGAAATGTCTCCAATGTCCAGGAAAAGTGAAGACGGTTATTGCAACTTCTATTGCCCTAATGACAATTGCAATGTCAGTAGAAACAATGTTACAACAAGGATTTCAGCCAACCCTCTTCTGCCTTGTCAATTGACTCCGTCATCTTCTGCTACAAGTTCTGATGCAATGTATGATGACAGTCCTGCATCAACTTCATATACCTCCGCATCACCTGGTATGATGTCCAGCAACACCCCCACCATGGAAACAACAGAAGAAAGGAATATCCAAATGCCAAGCTATATGAATCTGACAGCATCAACTAAGGCGAAGAAGAATGCTTACAGGCATTCTTTCAACTTGGACAGAGTAATAATGGGGGATTCTCATAGCAAATCAACGACAATACTGAGTGGAGATGCAAGGAGCAGTGCTGATTCTGTTTGTTCAATTAATTTTCATAATAATCTACACCCATCTTTAAGGTCTGGTATGAAGGATTCGTTGAGACATCAAAGAAGACATCAGCAGAAATAG	1332	0.4339	MGGSGKWLKSLITLRKPTKNDIEKVNDKGKKKWRLWRSSSEGFGSSLKNVKKGHEEVASEKSDSSFLVDEVFIAAMAAVVRAPPKDFMLIKKEWAAIRIQAAFRAFLARQALKALKAVVRLQAIFRGRQVRKQAAVTLRCMQALVRVQASVRARSATMSPCRQAAETLLKKHQDESDPLKQAERGWCDIPGTAEEVRAKLHIRQEAAIKREKIMAYSHSQKQSRISASPKSKTTKATSLLKHHSHDNSWLDSWIAAKPLGNRLLEKMHVGPREMSPMSRKSEDGYCNFYCPNDNCNVSRNNVTTRISANPLLPCQLTPSSSATSSDAMYDDSPASTSYTSASPGMMSSNTPTMETTEERNIQMPSYMNLTASTKAKKNAYRHSFNLDRVIMGDSHSKSTTILSGDARSSADSVCSINFHNNLHPSLRSGMKDSLRHQRRHQQK*	444

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pte1g00439	443	PANTHER	IQ-DOMAIN 5-RELATED	1	403	-	-
	Pte1g00439	443	MobiDBLite	consensus disorder prediction	217	240	-	-
	Pte1g00439	443	Pfam	IQ calmodulin-binding motif	116	133	IPR000048	GO:0005515
	Pte1g00439	443	Pfam	IQ calmodulin-binding motif	94	113	IPR000048	GO:0005515
	Pte1g00439	443	ProSiteProfiles	IQ motif profile.	116	143	IPR000048	GO:0005515
	Pte1g00439	443	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	80	134	IPR027417	-
	Pte1g00439	443	MobiDBLite	consensus disorder prediction	315	352	-	-
	Pte1g00439	443	Gene3D	-	90	143	-	-
	Pte1g00439	443	ProSiteProfiles	IQ motif profile.	92	120	IPR000048	GO:0005515
	Pte1g00439	443	SMART	iq_5	114	135	IPR000048	GO:0005515
	Pte1g00439	443	SMART	iq_5	91	113	IPR000048	GO:0005515
	Pte1g00439	443	MobiDBLite	consensus disorder prediction	421	443	-	-
	Pte1g00439	443	MobiDBLite	consensus disorder prediction	218	235	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pte1g00439	Pte-Chr1	4989986	4992922	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pte1g00439	1	377	IQD Protein Family	AT1G72670	49.351	3.90e-96	293

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pte1g00439	-		-	qsa:O6P43_027599	430.254