Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte1g00438 ATGGGGCATCACTCATGCTGCAACAAGCAGAAGGTCAAAAGGGGTCTATGGTCACCTGAAGAAGATGAAAAACTCATCAATTATATTTCAACTTATGGACATGGTTGCTGGAGTTCAGTCCCTAAACGTGCTGGCCTGCAGAGGTGTGGAAAGAGCTGTAGACTAAGATGGATAAATTACCTTAGACCTGATTTAAAGCGTGGAAGTTTCTCTACTCAAGAAGCGGCACTCATAATTGAGCTTCACAGCATTCTTGGAAACAGGTGGGCACAGATTGCTAAGCATCTACCTGGAAGAACAGATAATGAGGTCAAGAACTTCTGGAATTCAAGCATAAAGAAGAAACTCATGACTCATGAACTTGTTCCATCTGCTCTAGCCTCGTTCTCTGATATTCACTGCAGCTCTACTAGTTCTTTGGAAAATTTATTCCATTTCAATATGAATATTCCAAGTCTCACTCGAAACCCTCAACAAGATATGTATCTGCCAATCCCATCACCATTTTTACAAGGTCTTGATCATGGTGAGCTTAGACTAGATATCAATGAGTACAATGGCAATCTCCTTCATCTTCAGACTCAATTGCCATTGCAAGCAGCAAATTATTCTTATGAAGAAACGTGGTCAACGTCTGGTCTACCTCTTCATATTGATCCAAACCAAGAAAATCAAAACCTGTTTATCAGTCAACCTGCTTCAAATATTTTAGAAAACTTCATGCAACCAAGTTTCGGAAAGCTCCTAGTTGAGAGTTCACAAATGAAGCAAGTACTTCCAAAGCTCCATGAGACCAGTGAGGCTTATGTCAGTGCTTTGCCATTTTCATCTGCTTTGGAAGATCTTGACCATGTCACGAGACTACAGATTTACCATCCTGGCGTTGATTCAATTTCAAATGCTCATGTGCTGGAACCAAATCAAATGGACTACATTGAATCTATGATCTCAATGTTGCCATCATGTTCATCAACAACAACAGCAACAACTGTATCGACATCATCAACATTGTCATTGTCACCTTCATCAAGCGGCCAAACTATCGCCAAAAGCACTCCTCCTTCAAGCTGGGAAGCTTAG 1080 0.4083 MGHHSCCNKQKVKRGLWSPEEDEKLINYISTYGHGCWSSVPKRAGLQRCGKSCRLRWINYLRPDLKRGSFSTQEAALIIELHSILGNRWAQIAKHLPGRTDNEVKNFWNSSIKKKLMTHELVPSALASFSDIHCSSTSSLENLFHFNMNIPSLTRNPQQDMYLPIPSPFLQGLDHGELRLDINEYNGNLLHLQTQLPLQAANYSYEETWSTSGLPLHIDPNQENQNLFISQPASNILENFMQPSFGKLLVESSQMKQVLPKLHETSEAYVSALPFSSALEDLDHVTRLQIYHPGVDSISNAHVLEPNQMDYIESMISMLPSCSSTTTATTVSTSSTLSLSPSSSGQTIAKSTPPSSWEA* 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte1g00438 359 Gene3D - 11 67 - -
Pte1g00438 359 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Pte1g00438 359 Pfam Myb-like DNA-binding domain 67 109 IPR001005 -
Pte1g00438 359 FunFam Myb transcription factor 69 116 - -
Pte1g00438 359 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Pte1g00438 359 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Pte1g00438 359 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Pte1g00438 359 MobiDBLite consensus disorder prediction 334 359 - -
Pte1g00438 359 FunFam MYB transcription factor 6 66 - -
Pte1g00438 359 CDD SANT 17 61 IPR001005 -
Pte1g00438 359 Gene3D - 69 116 - -
Pte1g00438 359 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Pte1g00438 359 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Pte1g00438 359 SMART sant 13 63 IPR001005 -
Pte1g00438 359 SMART sant 66 114 IPR001005 -
Pte1g00438 359 CDD SANT 69 109 IPR001005 -
Pte1g00438 359 PANTHER MYB DOMAIN PROTEIN 55 1 177 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte1g00438 Pte-Chr1 4983191 4984676 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte1g00438 1 118 MYB Transcription Factor Family AT3G13890 95.763 1.10e-81 251
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pte1g00438 Myb_DNA-binding 2.6e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte1g00438 K09422 - qsa:O6P43_018330 386.726