Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte1g00411 ATGGCTGGAAGGACAACTGAAAACGAAGTCTGTCCTAAGCTTTTAACTTTCATTCCCAAAAAGAGTGAGTGGCTGATGAATAGCGATGATAGCATAAACCACAAGTCATCAGAGGAGCAAAAACTGGAGCTAAGGCTCGGTCCGCCATGCGAGGACTGGAACTCCATGGATCTTATCAAGCAGACAAACCAGTCTGAAATGTATCATAGGTATTTCTCAACAGTAGCTCAAAATGGTCGGAACGCAAGCAGCAGCACTCTCGGTCGTAGCCACCATGGAGAAAAGGAAACATTTTTACCATCTTCTGCTAATACAGCTGGGCATAACAGCTCACAGAAAAGAACTGCTCCTGGTCCAGTGGTGGGTTGGCCTCCAATTCGATCATTTAGGAAGAATATTGCAAGCGGCAATGGTCCCACATCCAGTTCAGACACTCCTTCACCGCATGAGCATTTTGTTTCAGACAAGCCTAGTGGCAAGAAGCCTACAGATTGCAGCAGCAGGAGGAGAGGCATGTTTGTGAAGATCAACATGGATGGAGTCCCAATTGGAAGAAAAGTGGATCTTCTCGCTTTCGACAGCTACAGAATGCTCTCCTCTGCTGTTGACGAACTCTTCAGAGGGCTCCTCGCAGCACAAAGAGATTCCCCTGCTAGTGGAATAGAGAACAAGGAAGAGGATGATGAGAAAGCAATTGCTGGTTTATTGGATGGGAGTGGAGAATATACTCTAGTTTACGAGGACAATGAAGGAGATAGGATGCTTGTTGGAGATGTGCCATGGCAGATGTTTGTCTCGACAGTGAAGAGGCTGCGCGTGTTCAAGAGCTCAGAGCTTCCTTCTCTTGGCCTTGATAGCAAGCAAGATAGGAATATGGTTTCTTCTGTATTGAAATGA 897 0.4627 MAGRTTENEVCPKLLTFIPKKSEWLMNSDDSINHKSSEEQKLELRLGPPCEDWNSMDLIKQTNQSEMYHRYFSTVAQNGRNASSSTLGRSHHGEKETFLPSSANTAGHNSSQKRTAPGPVVGWPPIRSFRKNIASGNGPTSSSDTPSPHEHFVSDKPSGKKPTDCSSRRRGMFVKINMDGVPIGRKVDLLAFDSYRMLSSAVDELFRGLLAAQRDSPASGIENKEEDDEKAIAGLLDGSGEYTLVYEDNEGDRMLVGDVPWQMFVSTVKRLRVFKSSELPSLGLDSKQDRNMVSSVLK* 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte1g00411 298 FunFam Auxin-responsive protein 166 287 - -
Pte1g00411 298 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 39 279 IPR003311 GO:0005634|GO:0006355
Pte1g00411 298 Gene3D - 166 288 - -
Pte1g00411 298 MobiDBLite consensus disorder prediction 149 167 - -
Pte1g00411 298 SUPERFAMILY CAD & PB1 domains 169 274 - -
Pte1g00411 298 MobiDBLite consensus disorder prediction 97 116 - -
Pte1g00411 298 MobiDBLite consensus disorder prediction 79 167 - -
Pte1g00411 298 ProSiteProfiles PB1 domain profile. 171 276 IPR000270 GO:0005515
Pte1g00411 298 MobiDBLite consensus disorder prediction 133 148 - -
Pte1g00411 298 Pfam AUX/IAA family 42 282 IPR033389 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte1g00411 Pte-Chr1 4464029 4468315 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte1g00411 166 279 B3 DNA Binding Superfamily AT4G23980 33.333 3.31e-12 65.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX or IAA Pte1g00411 AUX_IAA 1.5e-65 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte1g00411 K14484 - cave:132187278 314.694
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte1g00411 1 4464029 4468315 Pte1g00411 1 4464029 4468315 RCT