Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte1g00404 ATGACAGCAATAAGTACTAGTGGCATCAACTCTTCATCATGTTCACCTCATTCACCATTCTCAGATACTTCAGCAAAAGAAGAAACTCAGACTGCACAAGAGCGGAAAAGAGCAAAAAGAACCAGAGACACTAGCAGGCACCCAGTTTACCATGGAGTCAGAAAGAGGTATTGGGGCAAATGGGTGTCAGAAATTCGTGAGCCTCGCAAGAAATCTCGTATATGGCTTGGTACTTTTGCTACAGCAGAGATGGCCGCTAGAGCACATGATGTTGCTGCTTTGAGTATTAAAGGTAATTCTGCAGTTCTGAATTTTCCTGAGCTAGCTGAGTTGTTACCAAGACCAGTTTCTTTGACCGCACGTGACATTCAAGCTGCTGCTGCTGCTGCAGCTGCAATGGTCAAATTTGATCCAGCTGTACAATCATCACCATCATCGTCTTTTTCGATTTCAGAAGCTTCGGAGTCAGAAGGGTTGGATGAGATTGTCGAGTTGCCAAATATAGAAGGCAATCTTGATTCTGAAGATTCACCAAATGAGGTCATAATGATCGACGACACGAGAGACTGGTGGGTGTATCCACCGATGGTGGTAGAGGACGAAGTTGAATTTTGTGGTGATTTCTTTGATCCATTCTCAACAGTTCAGCGCTCAAATTATCCAAGCAAACGTGGAAGACAAGTTTGA 687 0.4396 MTAISTSGINSSSCSPHSPFSDTSAKEETQTAQERKRAKRTRDTSRHPVYHGVRKRYWGKWVSEIREPRKKSRIWLGTFATAEMAARAHDVAALSIKGNSAVLNFPELAELLPRPVSLTARDIQAAAAAAAAMVKFDPAVQSSPSSSFSISEASESEGLDEIVELPNIEGNLDSEDSPNEVIMIDDTRDWWVYPPMVVEDEVEFCGDFFDPFSTVQRSNYPSKRGRQV* 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte1g00404 228 PRINTS Ethylene responsive element binding protein signature 72 88 IPR001471 GO:0003700|GO:0006355
Pte1g00404 228 PRINTS Ethylene responsive element binding protein signature 50 61 IPR001471 GO:0003700|GO:0006355
Pte1g00404 228 CDD AP2 50 108 IPR001471 GO:0003700|GO:0006355
Pte1g00404 228 SMART rav1_2 49 112 IPR001471 GO:0003700|GO:0006355
Pte1g00404 228 SUPERFAMILY DNA-binding domain 49 107 IPR016177 GO:0003677
Pte1g00404 228 ProSiteProfiles AP2/ERF domain profile. 49 106 IPR001471 GO:0003700|GO:0006355
Pte1g00404 228 MobiDBLite consensus disorder prediction 1 27 - -
Pte1g00404 228 MobiDBLite consensus disorder prediction 1 48 - -
Pte1g00404 228 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 29 171 - -
Pte1g00404 228 Gene3D AP2/ERF domain 49 107 IPR036955 GO:0003700|GO:0006355
Pte1g00404 228 MobiDBLite consensus disorder prediction 28 48 - -
Pte1g00404 228 FunFam Ethylene-responsive transcription factor 2 48 107 - -
Pte1g00404 228 Pfam AP2 domain 48 98 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte1g00404 Pte-Chr1 4398741 4399738 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte1g00404 24 195 AP2-EREBP Transcription Factor Family AT5G11590 54.011 5.81e-55 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pte1g00404 AP2 3.7e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte1g00404 K09286 - qsa:O6P43_018193 228.794
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte1g00404 1 4398741 4399738 Pte1g00404 1 4398741 4399738 RCT