Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte1g00397 ATGTCTATACCATTAGAACATGATTATATAGGCTTGACAGAGAATTCTTCGATGGTAAGAAGCTCTGGGAAGATATCATCTTCTGTGTCCTCAAATCTTTCTACTGACGTTGAGAAGGGCTCTTCTTTCAACTTGAAGGAGACTGAGCTTAGACTTGGCCTACCTGGTTCTCTATCTCCTGACAGAAAACCATCAACTGGGGTCTCTCTTTTTGGTAAGGATTTGCAGGATATGCGCAATGGGTACTCTGCGGCTATCCCTTCGAAGAACCTGGTTTCTGGGGCTAAGAGAGGCTTTTCTGATGCTCTTGACTCTTCTTCTCCGAAACGGGTTCTCTCTGTAAACGATGGATCTGAAGTTGAAGTGGGAAAGGGAGCTGCTTTATTGTCTCCAAAAGCTATGAATGGTGGAAATCCTCTTGGTGTTTCAGAGGGTAAAAGTAATTCTCAGCAGGTTTCTTCACAAACCAAAACCATGAAAGAGGTTGGCATTGTCCCTCAATCTCCACAGTCATTTCAGGAGGCAACGCATCAGCTTTCAGCTGCAAATGACAATAATAGCTCCCCTGCTGCAAAGGCACAGCTTGTGGGATGGCCGCCAATCAGATCTTTCCGAAAGAACAGCATGGTCTCTAATTTGGCAAAGAACAACCATGATGATGCTGAGGCCAAAGCAGAACTTGGTTGTCTCTATGTAAAGGTGAGCATGGATGGCGCGCCATACCTAAGAAAGGTTGATCTGAAAACCTACAGCAACTATTTGGAACTCTCGTCTGCTCTTGAGAAGATGTTCAGCTGCTTTACAATTGGTCAATGCCGCTCTCATGGTCTTCCTGGGAAAGATGGCCTCAGTGAGAGCTGTTTGAAGGATCTACTCCATAGTTCTGAATATGTTCTTACGTATGAAGATAAAGATGGTGACTGGATGCTTGTTGGCGACGTACCCTGGGGGATGTTTACCGATTCATGTAAGAGGTTAAGAATCACGAAAGGTTCCGAGGCAATTGGACTTGCTCCAAGGGCCATGGAGAAATCCAAGAACCGGAACTAA 1050 0.4514 MSIPLEHDYIGLTENSSMVRSSGKISSSVSSNLSTDVEKGSSFNLKETELRLGLPGSLSPDRKPSTGVSLFGKDLQDMRNGYSAAIPSKNLVSGAKRGFSDALDSSSPKRVLSVNDGSEVEVGKGAALLSPKAMNGGNPLGVSEGKSNSQQVSSQTKTMKEVGIVPQSPQSFQEATHQLSAANDNNSSPAAKAQLVGWPPIRSFRKNSMVSNLAKNNHDDAEAKAELGCLYVKVSMDGAPYLRKVDLKTYSNYLELSSALEKMFSCFTIGQCRSHGLPGKDGLSESCLKDLLHSSEYVLTYEDKDGDWMLVGDVPWGMFTDSCKRLRITKGSEAIGLAPRAMEKSKNRN* 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte1g00397 349 Gene3D - 223 343 - -
Pte1g00397 349 ProSiteProfiles PB1 domain profile. 229 331 IPR000270 GO:0005515
Pte1g00397 349 SUPERFAMILY CAD & PB1 domains 229 329 - -
Pte1g00397 349 Pfam AUX/IAA family 47 340 IPR033389 -
Pte1g00397 349 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 44 336 IPR003311 GO:0005634|GO:0006355
Pte1g00397 349 FunFam Auxin-responsive protein 224 341 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte1g00397 Pte-Chr1 4353456 4356076 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte1g00397 233 339 B3 DNA Binding Superfamily AT4G23980 31.776 1.59e-08 54.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX or IAA Pte1g00397 AUX_IAA 1.2e-88 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte1g00397 K14484 - qsa:O6P43_018182 493.426
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte1g00397 1 4353456 4356076 Pte1g00397 1 4353456 4356076 RCT