Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte1g00393 ATGTATCACTTCCCTCCAAATAGTGCCGCATCTTTGCAAATGGGCGTGGACATGCCTAACAATCGTCAAAACAGTTCTCACACCAAGGACTACTTTGCTTCTCCAGCTCTTTCTCTCAGCCTAGCAGGGATTTTTCGACATGCGGCGCCAGCAGCATCGGTGGATGAAGTGGCCATGGAGGTGGAGGAGGGGGAAGAAGGAAGTGGAGGAGGGAAGCGAGATGATGCAGTAGAGATTAGTAGTGAGAACTCGGGACCTGCATCAAGATCAAAGTCAGATGATGATTTTGATGTTGAAGGAGTCGAAGATGATGGTGATGGAGACAACAAGAGCAAGAAGAAAAGAAAGAAGTATCACAGACACACTGCTGAGCAAATCAGAGAGATGGAAGCGCTTTTTAAAGAGTCACCTCACCCAGATGAGAAGCAGCGACAGCAACTTAGCAAGCAATTGGGGCTGCATCCAAGACAAGTGAAATTCTGGTTTCAAAATCGTCGAACCCAAATCAAGGCTATACAAGAGCGTCATGAGAATTCATTGTTGAAATCAGAACTAGATAAACTTCGAGACGAAAATAAGACCATGAGGGAGACCATTAACAAGGCTTGTTGCCCCAACTGTGGTACTAATGCAACCATTGGCAGAGGAAATACTATGAGCTCAGAAGAACAACAACTTCGTATTGAAAATGCCAAGCTCAAAGCTGAGGTAGAGAAACTCCGATCAGCTCTAGTGAGGTGTCCACAAGGAACAGCATCGCCTTCATCTTCTGCTGGAAATGTCGACCAAGAGCACAAAAGCTCTTTGGATTATTACTCTGGGATTTTTGGAATTGAGAAGACAAAGATTACAGAACTTGTTAATCAAGCAGTGGATGAGTTAATCAAGATGGCTACCGTAGGGGAACCATTGTGGATTCGTAGCGTTGAAACTGGACGTGAAATACTTAACTATGATGAGTATATGAAAGAGTTCAACCCTTCTGATCAAAGTTCAAGCAAACCAAAACCTAAAAGATCCATTGAGGCATCAAGAGAAACAGGAGTCGTTCTTGTTGATCTTCCTCACCTTGTTCAATGCTTCATGGACGTGAATCATTGGAAGGAAATGTTTCCATGCTTGATCTCAAAGGCAGCTACAGTTGATGTTATATGCAATGGGGATGGAGCTAACAGAAATGGTGGGGTGCAACTGATGTTTGCTGAACTGCAGATGCTTACACCAATGGTGCCCACCAGAGAGGTGTACTTTGTCAGATACTGCAAGCAATTGAATGCTCAACAGTGGGCAATAGTTGATGTTTCGATCGATAAAGTTGAAGACAACATAGACGCATCCCTCGTGAAATGCAGGAAGCGCTCATCTGGTTGCATTATTGAGGACAAGTCAAATGGCCATTGCAAGGTGACATGGGTGGAGCATCTGGAATGCCAGAAAAGTACTATTCATACCATGTATCGGACTATTGTTAACAATGGTTTAGCATTTGGGGCGAGACATTGGATGGCAACACTGCAAGTTCAATGTGAACGTCAAATGTTCTCCATGGCAACATATGTTCCTCTGAAGGATTCAAATGGTTTTTCTACCCTGGCTGGGAGGAAAAGCATATTGAAGTTGGCACAAAGAATGACATCGGGTTTCTGTCACGCAATTGGTGCATCAAGCTATCATAACTGGACAAGGATACCTAGTAAAACAGGGGAAGATGTAAGGATATGTTCTAGAAAGAACTTGAACGACCCTGGAGAACCTACTGGGGTAATACTTTGTGCAGTTTCTTCTGTGTGGTTACCGGTCTCTCCTCATGTTCTATTTGATTTCTTGAGGGACGAAGCACATCGGAGTGAGTGGGATATCATGTCAAGTGGAGGGAATGTTCAATCTGTAGCAAACTTAGCCAAAGGACAAGACAGAGGCAATGCAGTAGCCATCCAGTCAATACAATCAAAGGAAAACAGAATATGGATATTGCAAGACAGCTACACGAATAGTTTTGAATCCATGGTTGTTTATGCTCCTGTGGACATTACCGGAATGCAGTCTGTGATGACAGGATGCGATTCCAGCAATATCGCCATATTGGCTTCAGGATTTTCGATTCTTCCTGACGGTCTCGAATCAAGGCCATTGGTGATTACATCAAGACAGGAGGAGAAGAGTCCAGAAGGAGGGTCTTTGCTTACATTGGCGTTTCAGATCCGCACTAATTCTTCTCCATCTGCGAAGTTAACAAAGGAGTCCGTGGAGTCCATTAACACCTTTATATCTTGTACGCTAAAAAATATCAAAACGTTCTTGCAATGTGAGGATAACTAG 2319 0.4368 MYHFPPNSAASLQMGVDMPNNRQNSSHTKDYFASPALSLSLAGIFRHAAPAASVDEVAMEVEEGEEGSGGGKRDDAVEISSENSGPASRSKSDDDFDVEGVEDDGDGDNKSKKKRKKYHRHTAEQIREMEALFKESPHPDEKQRQQLSKQLGLHPRQVKFWFQNRRTQIKAIQERHENSLLKSELDKLRDENKTMRETINKACCPNCGTNATIGRGNTMSSEEQQLRIENAKLKAEVEKLRSALVRCPQGTASPSSSAGNVDQEHKSSLDYYSGIFGIEKTKITELVNQAVDELIKMATVGEPLWIRSVETGREILNYDEYMKEFNPSDQSSSKPKPKRSIEASRETGVVLVDLPHLVQCFMDVNHWKEMFPCLISKAATVDVICNGDGANRNGGVQLMFAELQMLTPMVPTREVYFVRYCKQLNAQQWAIVDVSIDKVEDNIDASLVKCRKRSSGCIIEDKSNGHCKVTWVEHLECQKSTIHTMYRTIVNNGLAFGARHWMATLQVQCERQMFSMATYVPLKDSNGFSTLAGRKSILKLAQRMTSGFCHAIGASSYHNWTRIPSKTGEDVRICSRKNLNDPGEPTGVILCAVSSVWLPVSPHVLFDFLRDEAHRSEWDIMSSGGNVQSVANLAKGQDRGNAVAIQSIQSKENRIWILQDSYTNSFESMVVYAPVDITGMQSVMTGCDSSNIAILASGFSILPDGLESRPLVITSRQEEKSPEGGSLLTLAFQIRTNSSPSAKLTKESVESINTFISCTLKNIKTFLQCEDN* 773
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte1g00393 772 Gene3D - 286 512 IPR023393 -
Pte1g00393 772 MobiDBLite consensus disorder prediction 65 79 - -
Pte1g00393 772 MobiDBLite consensus disorder prediction 13 29 - -
Pte1g00393 772 SUPERFAMILY Bet v1-like 278 511 - -
Pte1g00393 772 MobiDBLite consensus disorder prediction 1 29 - -
Pte1g00393 772 ProSiteProfiles 'Homeobox' domain profile. 112 172 IPR001356 GO:0003677
Pte1g00393 772 CDD homeodomain 119 170 IPR001356 GO:0003677
Pte1g00393 772 SUPERFAMILY Bet v1-like 554 764 - -
Pte1g00393 772 Coils Coil 223 243 - -
Pte1g00393 772 SMART START_1 285 511 IPR002913 GO:0008289
Pte1g00393 772 Coils Coil 171 198 - -
Pte1g00393 772 MobiDBLite consensus disorder prediction 59 122 - -
Pte1g00393 772 SUPERFAMILY Homeodomain-like 102 173 IPR009057 -
Pte1g00393 772 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 113 767 IPR042160 -
Pte1g00393 772 CDD START_ArGLABRA2_like 280 510 - -
Pte1g00393 772 FunFam Homeobox-leucine zipper protein HDG1 101 188 - -
Pte1g00393 772 FunFam Homeobox-leucine zipper protein GLABRA 2 285 510 - -
Pte1g00393 772 SMART HOX_1 114 176 IPR001356 GO:0003677
Pte1g00393 772 Gene3D - 102 184 - -
Pte1g00393 772 Pfam Homeodomain 115 170 IPR001356 GO:0003677
Pte1g00393 772 ProSiteProfiles START domain profile. 276 514 IPR002913 GO:0008289
Pte1g00393 772 ProSitePatterns 'Homeobox' domain signature. 147 170 IPR017970 GO:0000981|GO:0006355
Pte1g00393 772 Pfam START domain 287 511 IPR002913 GO:0008289
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte1g00393 Pte-Chr1 4304830 4311751 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte1g00393 79 771 Homeobox Transcription Factor Family AT1G79840 63.366 0.0 897
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Pte1g00393 START 1.3e-54 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte1g00393 K09338 - qsu:111988083 1173.3