Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte1g00372 ATGGATATTACCTCTGTTGAATCAAATAACAACACCCAAACTGACCAACACCCTTTGCTGAGAGAGCAGCGTAGCAGCAATAATAACCATGAGCATGTAATTGATATCGCAAGGAATGGTGATTCATCTCATACTAGCCAAGCTCCAGGAACCAGTTCTGAAGATCAACCAACTGTTGAGACACGTGCCCCTGATAATCAAGTACCTAGTTCTTCTTCAATACGACTGAATTCTAGGAATTCTTTCACGAGGAGAAGTGAGGGGTACCACAGGAGTCCGTTAAATTCTGGACTATGGATATCAATTGAGCTAATTCTTACTCTAAGTCAGATTGTAGCATCTATTGCTGTCTTGTTGTCGTCAAGGAATGAACATCCGCATGCCCCATTATTTGAGTGGATTGTGGGTTATGCATCTGGCTGTGTTGCTACTCTCCCTATCCTTTATTATCGATACTGGAATCGGTATCAAGGTGATGGGCAAGAAGTACCTCAGCTACAGGAAGCATCTTCTCAAAGTAATCCTGCTGAACCTTCTTCTTATACTGCTATGTCATTAACACAGATGACAAATGAGCAAAACCTCCACGTGTCTGGAGCAACCACGACAAACTCTCAGACAGGAACCTCTAGTTTAAGAGCCAGTAGAGTGGTCGACCATTTCAAGATGACTTTAGACTGCTTCTTTGCGGTGTGGTTTGTTGTGGGTATTGTTTGGATGTTTGGAGGTCACGCATCATCTGGTGATGCACCGAAATTGTATAGGTTGTGTGTAGTATTTCTCACCTTTAGCTGTATTGGATACGCTATGCCCTTCATTCTATGTTTAACAATTTGTTGCTGCTTGCCCTGCATAATTCATGTCCTCGGTGTTGAGGAGAATGCTTCTCAGACTAGAGGAGCTACTGACGAATCCATTAGTGCTTTACCAACCTACTTATTTAAGTTGAAGAAAGATGAAAGTGGAGAGGATAGGGATTCGAACACTGAGGAGGGTGAATGTGGGTTCCTAGAATCAGGGACGGGAAAGAAACGATTTATATCGGGAGAAGATTCAGTTTGTTGTATTTGCTTAGCAGAATACACTGATGGTGATGAGCTCAGGGAGTTACCTTGTGTGCATGTCTTCCATGTGGATTGTGTTGACAAATGGTTGAAGATTAATGCATGCTGCCCTCTCTGTAAAAGTGATGTTGGTGAGAGAATCGGAGGTTCTGCTGCGGCTAGAGAGTCTGTTCAGCAATAG 1245 0.4305 MDITSVESNNNTQTDQHPLLREQRSSNNNHEHVIDIARNGDSSHTSQAPGTSSEDQPTVETRAPDNQVPSSSSIRLNSRNSFTRRSEGYHRSPLNSGLWISIELILTLSQIVASIAVLLSSRNEHPHAPLFEWIVGYASGCVATLPILYYRYWNRYQGDGQEVPQLQEASSQSNPAEPSSYTAMSLTQMTNEQNLHVSGATTTNSQTGTSSLRASRVVDHFKMTLDCFFAVWFVVGIVWMFGGHASSGDAPKLYRLCVVFLTFSCIGYAMPFILCLTICCCLPCIIHVLGVEENASQTRGATDESISALPTYLFKLKKDESGEDRDSNTEEGECGFLESGTGKKRFISGEDSVCCICLAEYTDGDELRELPCVHVFHVDCVDKWLKINACCPLCKSDVGERIGGSAAARESVQQ* 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte1g00372 414 MobiDBLite consensus disorder prediction 1 90 - -
Pte1g00372 414 MobiDBLite consensus disorder prediction 39 90 - -
Pte1g00372 414 Pfam Ring finger domain 354 395 IPR001841 -
Pte1g00372 414 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 23 398 - -
Pte1g00372 414 MobiDBLite consensus disorder prediction 1 23 - -
Pte1g00372 414 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 337 402 IPR013083 -
Pte1g00372 414 SMART ring_2 354 394 IPR001841 -
Pte1g00372 414 MobiDBLite consensus disorder prediction 24 38 - -
Pte1g00372 414 ProSiteProfiles Zinc finger RING-type profile. 354 395 IPR001841 -
Pte1g00372 414 SUPERFAMILY RING/U-box 347 401 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte1g00372 Pte-Chr1 4161505 4164827 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte1g00372 1 400 C3H Transcription Factor Family AT1G80400 52.913 4.05e-146 419
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte1g00372 - - jre:109009152 543.502