Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte1g00371 ATGGAAAAAGATGGTGGTCTTGGACTTGAAATCACTGAGCTGAGGTTGGGTCTTCCGGGAGTAGATCATCAGCCTGGTGCGTTAGACAAGAACGAGAAGAAGAGGACATTTTCAGAAATTGATGATGACGATGATGATGATGCTGTTTTTAATGGAACCTCCAACCGTGAGCGCTCGCTGTCGAAGAATCATGTAGTGGGTTGGCCTCCTGTGTGTTCATACAGGAAGAAGAATAGTCTCAATGAAGCTTCAAAGATGTACGTGAAGGTGAGCATGGACGGGGCACCGTTCTTGCGTAAAATTGACGTGGCCATGCATAAGGGATACTCGGAACTTGCCATGGCCTTAGAGAAGCTTTTTGGTTGCATGGGCATCTGCGAGGCTTTGAAGGACAAAGACAGCTCTGAACACGTTCCCATTTACGAAGACAAAGACGGTGACTGGATGCTAGTGGGTGATGTCCCTTGGGAGATGTTTGTTGAATCATGCAAGAGATTGAGGATCATGAAGAGGTCGGATGCCAAGGGATCATTTGTGCTGCAACCAAAAGGCTCCCCAAAGGGAATTCTACAAGATGTTACTAATTGA 588 0.466 MEKDGGLGLEITELRLGLPGVDHQPGALDKNEKKRTFSEIDDDDDDDAVFNGTSNRERSLSKNHVVGWPPVCSYRKKNSLNEASKMYVKVSMDGAPFLRKIDVAMHKGYSELAMALEKLFGCMGICEALKDKDSSEHVPIYEDKDGDWMLVGDVPWEMFVESCKRLRIMKRSDAKGSFVLQPKGSPKGILQDVTN* 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte1g00371 195 ProSiteProfiles PB1 domain profile. 85 173 IPR000270 GO:0005515
Pte1g00371 195 SUPERFAMILY CAD & PB1 domains 78 170 - -
Pte1g00371 195 FunFam Auxin-responsive protein 80 181 - -
Pte1g00371 195 MobiDBLite consensus disorder prediction 19 47 - -
Pte1g00371 195 Pfam AUX/IAA family 48 176 IPR033389 -
Pte1g00371 195 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 8 175 IPR003311 GO:0005634|GO:0006355
Pte1g00371 195 MobiDBLite consensus disorder prediction 26 40 - -
Pte1g00371 195 Gene3D - 80 181 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte1g00371 Pte-Chr1 4150036 4152536 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte1g00371 83 175 B3 DNA Binding Superfamily AT4G23980 37.634 6.25e-11 58.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX or IAA Pte1g00371 AUX_IAA 1.7e-45 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte1g00371 K14484 - gmx:547784 273.092