Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte1g00318 ATGTCAGCAAGTTCAAGCTCAGTGATCAGAGAAGATCCATCGGAAGACTTGTTAAGGCCACCATCAATGGAAGCTTCCGGCGATGCGAGTGAATCTTCATCTTCATCTTCCTCCACTTTAACTCAGGCTTTTCCTTTCTCTTCCGGAAACCCTAGAATCGAAGAAACTAGAGGTGTCATGCTTCTCTATCGCGAAGACGTCGTTTCGACCTCCATTTCCGATCTTCCTATTGGAAGGAAGCCACTACTATGTGTGCTTGGAGTTCCAAATCACATGACCTACGCAGATTTCTGTCAATTTTGTGGTTCATTCATTCATCATATCTTAGAGATGAGAATTGTCAGAAATGATGGGATGGAGGATTTCTACAGCGTGCTAATCAGATTAGATGATCAAGTTTCTGCTGATAATTTTTACAAGCATTACAGTGGACGCCGCTTCTCTTCACTGGAGGCTGAGGTTTGTCGTGTTCTTTTCACATTGGATGTGCAATACACGGGTTTGATTGAACATTCACGAGCATTGACGACGAATTTGATTGAACAACCCTCGTGCCCTGTTTGTCTTGAGAGGCTGGATCAAGACTCTAGCGGAATTCTCACAACAATATGCAACCATTCTTTCCATATTTCATGTATATCAAAGTGGACAGACTCTTCTTGTCCGGTATGCCGCTATTGCCAGCAGCAAGCTGAAAAATCTGTATGCATCATTTGTCAAACCACTGAGAATCTCTGGATGTGTGTTATATGTGGATTTGTAGGATGTGGGAGATATAAAGGAGGGCATGCCATCATACATTGGAAGGAGACGCAACACTGCTATTCTCTAGATTTGGAAACTCAGCGTGTGTGGGATTATGTGGGAGACAACTATGTTCACAGATTAATTCAATCCAAGACTGATGGGAAGTTGGTTGAGCTGAATTCATATTGTGCACACAATAATAATGGTTGTGAAAGTTGCAATTCGGAAGACGACATGGTCAACGAGGCTATTTTAAACAGTAAAGTTGAAGCTATCGTTAACGAGTACAATGAATTACTGGCTACTCAACTGGAGAACCAAAAATTATATTTTGAGGCCTTGCTGCAAGAAGTGAAAGAAGAAACTGTAAGGAAAATTTCTGAAGCTGTTGAGAAGGCTGTGACTCTTAAAATGCAGAAGATGCAGCCTAAACTTGATAGATGTCTGAAGGAGAAGAAATTTCTTGATGACCTTAATGAGAATCTTCTAAAAAATCAGGAGATTTGGAAAGCCAAGATAAATGAAGCTGAAGAGAGGGAGAAGAAGGCTTTGAAGTTGAAGGATACCAAAATACAAGAGGTGGAAGAGCAGCTTAGGAATCTGATGGCATGCCTTGAATCTGGAAATACAACGGAGCATCCATCCACTGCCGATTCAAAACAGATCAATTAG 1419 0.4137 MSASSSSVIREDPSEDLLRPPSMEASGDASESSSSSSSTLTQAFPFSSGNPRIEETRGVMLLYREDVVSTSISDLPIGRKPLLCVLGVPNHMTYADFCQFCGSFIHHILEMRIVRNDGMEDFYSVLIRLDDQVSADNFYKHYSGRRFSSLEAEVCRVLFTLDVQYTGLIEHSRALTTNLIEQPSCPVCLERLDQDSSGILTTICNHSFHISCISKWTDSSCPVCRYCQQQAEKSVCIICQTTENLWMCVICGFVGCGRYKGGHAIIHWKETQHCYSLDLETQRVWDYVGDNYVHRLIQSKTDGKLVELNSYCAHNNNGCESCNSEDDMVNEAILNSKVEAIVNEYNELLATQLENQKLYFEALLQEVKEETVRKISEAVEKAVTLKMQKMQPKLDRCLKEKKFLDDLNENLLKNQEIWKAKINEAEEREKKALKLKDTKIQEVEEQLRNLMACLESGNTTEHPSTADSKQIN* 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte1g00318 472 Pfam BRCA1-associated protein 2 76 171 IPR011422 -
Pte1g00318 472 SMART ring_2 185 224 IPR001841 -
Pte1g00318 472 CDD RRM_BRAP2_like 83 164 - -
Pte1g00318 472 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 227 307 IPR013083 -
Pte1g00318 472 ProSiteProfiles Zinc finger RING-type profile. 185 225 IPR001841 -
Pte1g00318 472 CDD RING-H2_BRAP2 183 226 IPR047243 -
Pte1g00318 472 Pfam Ring finger domain 184 225 IPR001841 -
Pte1g00318 472 ProSiteProfiles Zinc finger UBP-type profile. 219 312 IPR001607 GO:0008270
Pte1g00318 472 Coils Coil 350 370 - -
Pte1g00318 472 MobiDBLite consensus disorder prediction 1 51 - -
Pte1g00318 472 MobiDBLite consensus disorder prediction 26 49 - -
Pte1g00318 472 Pfam Zn-finger in ubiquitin-hydrolases and other protein 236 295 IPR001607 GO:0008270
Pte1g00318 472 PANTHER BRCA1-ASSOCIATED PROTEIN 22 464 - -
Pte1g00318 472 SUPERFAMILY RING/U-box 201 300 - -
Pte1g00318 472 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 170 226 IPR013083 -
Pte1g00318 472 Coils Coil 408 428 - -
Pte1g00318 472 SMART Zf_UBP_1 235 284 IPR001607 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte1g00318 Pte-Chr1 3488738 3493899 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte1g00318 179 225 C3H Transcription Factor Family AT1G72220 53.061 2.29e-09 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte1g00318 K10632 - qsa:O6P43_027928 728.783