Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte1g00311 ATGGACAACCTTGGAAAACCAAAACCATCATGTCTTTCTGAAACTTCAGCTGCAGTCTCAGTTCAAGAGTGTTCTCTCAGCTCAACACCCTTCAATCCCTCCATGGTTGGTCAGAAAGAGGAAAACCAACTATTGAAACAACAACAGAAACAGCTTCCTGATCACGATTCAGCTTCTCCTGTCGTATTTCTGGATGTAAGGGCACCTAGTAAAAATTCAGATGGTGAGCATTCAAAGCCAGAACTCAATCTCATTGACTGTTTTGATATGAATTCAGCGAGGACTCCTTCAGGTTATACTCAAGGTAATGAAATGGAGCCTCGTATATTCTCATGCAACTATTGCCAAAGAAAGTTCTATAGTTCACAGGCACTTGGAGGACACCAGAACGCACATAAGCGCGAAAGGACCCAAGCAAAAAGAGGTCAGAAACTTGGAGCTGCAGCCTCCATGGATTTTGGTCATAGGTTCTCCAGCATGGCTTCTTTGCCTTTGCATGGCTCATATGAACGAGCACTTGGAATTCAGGTACATTCTATGATTAACAAACCTTCTTATCAAACCTCCATAATTGGCTCAGCTCGTCCCTACGGTCATAATGGATGGAACTGGAGGAACCCCATTGATTCACATCCAGGAATCTCGAAATTTACTGCGCTGAACTTTAAAGTTGAAGTGGAAAGAGGATCATCCAATACTAATGGAGTTCCAAGGTTCGATTTTGTTCCAAAAATATTTCAGATGAGCAGTGCCAGCCATTTGAAAACCAAAACAGATGAGCTGCAGCTTGACTTGTCCCTCAAACTCTGA 810 0.4284 MDNLGKPKPSCLSETSAAVSVQECSLSSTPFNPSMVGQKEENQLLKQQQKQLPDHDSASPVVFLDVRAPSKNSDGEHSKPELNLIDCFDMNSARTPSGYTQGNEMEPRIFSCNYCQRKFYSSQALGGHQNAHKRERTQAKRGQKLGAAASMDFGHRFSSMASLPLHGSYERALGIQVHSMINKPSYQTSIIGSARPYGHNGWNWRNPIDSHPGISKFTALNFKVEVERGSSNTNGVPRFDFVPKIFQMSSASHLKTKTDELQLDLSLKL* 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte1g00311 269 SUPERFAMILY beta-beta-alpha zinc fingers 107 137 IPR036236 -
Pte1g00311 269 ProSiteProfiles Zinc finger C2H2 type domain profile. 110 137 IPR013087 -
Pte1g00311 269 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 8 269 IPR044246 GO:0009788
Pte1g00311 269 MobiDBLite consensus disorder prediction 30 58 - -
Pte1g00311 269 Gene3D Classic Zinc Finger 92 166 - -
Pte1g00311 269 FunFam Zinc finger protein 2 88 156 - -
Pte1g00311 269 ProSitePatterns Zinc finger C2H2 type domain signature. 112 132 IPR013087 -
Pte1g00311 269 MobiDBLite consensus disorder prediction 30 55 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte1g00311 Pte-Chr1 3444448 3445596 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte1g00311 5 270 C2H2 Transcription Factor Family AT5G10970 38.542 6.59e-41 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pte1g00311 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte1g00311 - - qsa:O6P43_017957 272.322
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte1g00311 1 3444448 3445596 Pte1g00311 1 3444448 3445596 RCT