Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Pte1g00311 | ATGGACAACCTTGGAAAACCAAAACCATCATGTCTTTCTGAAACTTCAGCTGCAGTCTCAGTTCAAGAGTGTTCTCTCAGCTCAACACCCTTCAATCCCTCCATGGTTGGTCAGAAAGAGGAAAACCAACTATTGAAACAACAACAGAAACAGCTTCCTGATCACGATTCAGCTTCTCCTGTCGTATTTCTGGATGTAAGGGCACCTAGTAAAAATTCAGATGGTGAGCATTCAAAGCCAGAACTCAATCTCATTGACTGTTTTGATATGAATTCAGCGAGGACTCCTTCAGGTTATACTCAAGGTAATGAAATGGAGCCTCGTATATTCTCATGCAACTATTGCCAAAGAAAGTTCTATAGTTCACAGGCACTTGGAGGACACCAGAACGCACATAAGCGCGAAAGGACCCAAGCAAAAAGAGGTCAGAAACTTGGAGCTGCAGCCTCCATGGATTTTGGTCATAGGTTCTCCAGCATGGCTTCTTTGCCTTTGCATGGCTCATATGAACGAGCACTTGGAATTCAGGTACATTCTATGATTAACAAACCTTCTTATCAAACCTCCATAATTGGCTCAGCTCGTCCCTACGGTCATAATGGATGGAACTGGAGGAACCCCATTGATTCACATCCAGGAATCTCGAAATTTACTGCGCTGAACTTTAAAGTTGAAGTGGAAAGAGGATCATCCAATACTAATGGAGTTCCAAGGTTCGATTTTGTTCCAAAAATATTTCAGATGAGCAGTGCCAGCCATTTGAAAACCAAAACAGATGAGCTGCAGCTTGACTTGTCCCTCAAACTCTGA | 810 | 0.4284 | MDNLGKPKPSCLSETSAAVSVQECSLSSTPFNPSMVGQKEENQLLKQQQKQLPDHDSASPVVFLDVRAPSKNSDGEHSKPELNLIDCFDMNSARTPSGYTQGNEMEPRIFSCNYCQRKFYSSQALGGHQNAHKRERTQAKRGQKLGAAASMDFGHRFSSMASLPLHGSYERALGIQVHSMINKPSYQTSIIGSARPYGHNGWNWRNPIDSHPGISKFTALNFKVEVERGSSNTNGVPRFDFVPKIFQMSSASHLKTKTDELQLDLSLKL* | 270 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Pte1g00311 | 269 | SUPERFAMILY | beta-beta-alpha zinc fingers | 107 | 137 | IPR036236 | - | |
Pte1g00311 | 269 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 110 | 137 | IPR013087 | - | |
Pte1g00311 | 269 | PANTHER | C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN | 8 | 269 | IPR044246 | GO:0009788 | |
Pte1g00311 | 269 | MobiDBLite | consensus disorder prediction | 30 | 58 | - | - | |
Pte1g00311 | 269 | Gene3D | Classic Zinc Finger | 92 | 166 | - | - | |
Pte1g00311 | 269 | FunFam | Zinc finger protein 2 | 88 | 156 | - | - | |
Pte1g00311 | 269 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 112 | 132 | IPR013087 | - | |
Pte1g00311 | 269 | MobiDBLite | consensus disorder prediction | 30 | 55 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Pte1g00311 | Pte-Chr1 | 3444448 | 3445596 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Pte1g00311 | 5 | 270 | C2H2 Transcription Factor Family | AT5G10970 | 38.542 | 6.59e-41 | 140 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C2H2 | Pte1g00311 | None | None | None |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Pte1g00311 | - | - | qsa:O6P43_017957 | 272.322 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Pte1g00311 | 1 | 3444448 | 3445596 | Pte1g00311 | 1 | 3444448 | 3445596 | RCT |