Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte1g00296 ATGGAAGACTTGGTGACCATAATGTGCCCAAATTCTCCATATGTATGGGATGGAAGGGGATTCTCCGAGTGTTTTGGAGACTTATTGTTTGTTTTTACGGCGAACTTAGCAACTGTTACAATGATCGCTATATTTGCAATGACTACGAAGCATCATAGAAAAACTCAAAGGATTAGCTTGTCAGAAAGAATTGTCTTGGATTTTGTACCAACCATTGGGGCATCTCTATCAGTTTTGGAGATAATTCTGTCAATGAAGACAGAACTTGATGGACACCATGTTATATTTTATAAGTGGCTTACTAGCTGTTCAGAGTGTGTAATGTGGACAAGCATCATCATCTTCTCAAGGTGTGCAGGCGATCATAGCACAATCTGCATGGGGACTTTAGGTTATTGGTGGATAGTAAAATCCCTTCTGGAGATCATCCATTTGCTAACGGTGTCTTCATCATTGAAGGTGTACATGTGTGCCAAGGAAATATTCTCTGTCATATTGAATATCATCTTTTGCATCAGTATAATTGTTATCAGGATAAAGAAATCATCTTCCAAAAGTGGTTTGTTGGAAGAACCTCTTCTTTCTGAAGAGGAAGACCTTGAGGAAGGTTGTCATGGAAGACCTAAAGGAGTTACTTGGAGCTTTTGGGATCATATGATGTTTAACTTCATGACTCATGTAATGAAACTTGGGATTGCAAAGCAGCTGGGTAGTGAAGATCTGCTGCAGTTACCAAATGACATGGATGTTTGTTCCTGTCTTGATATAATGTCACGCTGCTGGGATTCTCAAATGAGAGAAAATAATGCAGGTCCTTCTTTGTTTAAATCAATATGTTGTGCATATGGATGGCCTTATCTCTGTCTTGGTTTTTTAAAGGTGATAAACGATTGCCTGGGTTTTGCTGGACCACTGCTTCTCAATAAGTTGATTCGGTTCCTTCAGCAAGGTTCTGGAGATTGGCATGGTTATGTTCTTGCAGTGTTATTAGGTCTCATTTCTATCATTAAATCCTTTTTGGATACGCAGTATACTTTTCATCTTTCAAAGCTGAAGCTGAAGCTCCGATCAAGTATCACTACTCTTATCTATCAGAAGTGCCTGTGGGTGAGCTTGGCAGAGCGATCAAAATTTTCTGATGGAGAAATACAAACATTCATGTCCGTGGATGCAGAGAGAACCATTAACTTGTGTAACTGTTTCCATGACATGTGGAGCTTGCCTCTACAAATCAGCTTGGCTCTGTACCTTCTGTATACACAAGTGAAATTTGCTTTTGTTTCTGGAGTAGCAATAACAATTTTGCTCATACCAGTAAATAGATGGATAGCCAAACTAATTGCAGGAGCTACTGAGAAAATGATGAAGGAGAAGGATGAGAGGATAAGGAAGACAGGAGAACTTTTGTCTTATATCCGAACCATAAAGATGTATGCGTGGGAAGTTATCTTTTCTAATTGGTTGATGGAGACTAGATCCTCGGAAGTGAAGCACTTGGCAATGCGAAAGTACTTGGATGCATGGTGCGTGTTCTTTTGGGCAACTACTCCAACTCTATTTTCTCTTTTCACCTTTGGCCTCTTTGCATTGTCAGGACACCAACTTGATGCTGCTACGGTGTTCACTTGTCTTGCATTGTTTAACACGTTGATTTCTCCTCTGAACTCATTCCCATGGGTCATAAATGGACTGATTGATGCTATGATATCCATTAGAAGGTTGAGTAGATTCCTCTCTTGCCCTGTCGCCAGAGAGATTGCTAATTCTCATTTAACCCTGTCCTCAACTGACCAGCCTCATTGGAGAAAAGATGTGGCTGTTAGTTTTGATGACGCATGCTGTTCTTGGGCAAACAGTGAGGAAAAAGAACTAAATTTGGCGTTGAATCATGTTAATCTTGGCCTTTCAAGGGGTTCATTCATTGCAGTTATTGGAGAGGTCGGCTCTGGTAAGTCGTCGTTATTGTATTCAATTCTTGGAGAAATGCGTAATGTCCGTGGATCAATAATTAAAGATGGAACGATAGCATATGCACCACAGGTGCCATGGATCTTGTCTGGAACAATACGCGAAAATGTATTGTTCGGAAAGAGCTATGATCCAAACAGGTATTTAGATACTATAGGGGCCTGTGCACTTGATGTCGACATCTCAATGATGACTGGAGGTGACATGACTTATATTGGAGAGAAAGGTGTCAACTTATCTGGTGGACAGAGGGCACGTCTTGCTTTAGCAAGGGCCGTGTATTGTTCCTCTGATATCGTTTTGCTTGATGATATCCTTAGTGCAGTTGATGCACAAGTTGCTCGTTGGATATTACAAAATGCCATTCTTGGGCCCCTCATGCAGGGAAAAACAAGAATACTTTGTACACATAACATACAGGCAATATCTTCTGCTGACATGATTGTGGTAATGGACAAAGGATGTGTGAAGTGGCAAGGAAGTTCAGCTGACTTCCAGATGTCTTCATACGTAGCTCATTCCCCTCTGAATGAAATCGACACATCCATATGCAATCAAGAAGAAGCTTGCAGTTCTGAAGTAAAACTTGTCTCTATAGAGGGTGATGATTCACATTCCTCAAAGGAAGCTGAACGCATTACTGAAGTTGAAAAAAGGAAGGAGGGTAAAGTGGAATATAGAGTTTACAAGGAATATGCTATGTTCTCTGGTTGGGTTATCACAGTTGTAATTTTCCTATCGGCCATTTTGATGCAAGCCTCCAAGAATGGAAATGACCTGTGGCTTTCATATTGGGTTGATACATCAACAGGGAGCAGTCATAACTCCACTTCATTCTATCTGGTTGTGCTAAGTTTCTTTTGTATCCTAAATTCTTCTCTAACACTGGTGAGAGCATTCTCATTTGCATTTGGTGGCTTGCAAGCGGCAAAGAAGGTGCATAATAGACTTCTCAGTATGCTTACGAATGCACCTGTGCGATTCTTTGATCAGACACCAGTTGGAAGAATATTGAACAGGTTGTCTTCCGATCTGTATACAATTGATGATTCACTTCCTTTCATTCTTAACATTCTCCTAGCAAATTTTGTTGGGCTGTTGGGTATTGCAATTGTTTTATCATACACGCAGGTATTCTTCTTGCTTTTGCTACTGCCAGTTTGGTACATCTACACCAAAATCCAGCTCTTCTATAGGTCAACATCAAGGGAACTAAGAAGACTTGACAGTGTTTCTCGGTCTCCAATATACTCTTCTTTCACAGAAACACTGGATGGATCATCAACTGTAAGAGCTTTTATGTCTGAGGATCACTTCTTTGCCAGGTTCGTTGAACACTTAAAGTTATATCAGCAAACTTCTTATACAGAAGTAAATGCAAGTCTGTGGCTTTCACTGCGTCTTCAGCTATTAGCTGCATTTATCGTCTCATTCATTGCTCTGATGGCTGTCATTGGATCTCGAGAAAAGCTACCAGTAAGATTCGGCACCCCAGGGCTGGTCGGACTTGCACTCTCGTATGCAGCTCCAATTGTGTCTTTACTGGGAAGCTTTCTAACAAGTTTCACTGAAACGGAAAAAGAAATGGTAGCCATTGAAAGAGCTCTAGAGTATATGGACATTCCTCAAGAAGAACTACTAGGACCTCAATCACTAAGCTCAGATTGGCCAAACAATGGAATTGTTCAGTTTCAGAATGTTACATTGAAATACTTGCCATCTTTGCCGGCTGCACTTCGTGATATTACTTGCACAATTGAAGGAGGGATGCAGGTTGGAATAATTGGAAGAACAGGAGCTGGAAAGTCTAGTGTGTTGAATGCCCTTTTCCGTCTAACTCCAATTTGTGCAGGCTCCATATTGGTGGATGGCATAAATATTGCAAATATTCCTGTTCGAGATATCCGTGCACGTTTTGCAATTGTTCCTCAGAGCCCATTTTTGTTTGAGGGAACAATAAGGCAAAATCTAGATCCATTGCAATCAAGCAATGATTTGAAGATTTGGAAAACGTTGGAGCAATGCCATGTGAAGGAGGAAGTAGAAGCAGGGGGAGGCCTGGATGCTAAGATAAAGGAATCTGGCTTATCATTTTCTGTTGGACACAGACAGCTTCTTTGCCTCGCTCGTGCACTTCTGAAATCTTCAAGAGTTCTTTGTTTGGATGAATGCACAGCTAATATAGACACTAAAACAGCTGCAATGCTGCAAAAGACCATATCCAGTGAATGCAGAGGAATGACAGTTATAACTATTGCACACCGCATTTCCACGGTCCTGAATATGGACAGGATTTTGATACTTGATCATGGCAACCTGGTGGAGCAAGGAAACCCACAAGCCCTCCTGCAAGATGACCACTCCGTGTTTTCCAGATTTGTTAAGGCTTCCACGATGTAG 4368 0.4109 MEDLVTIMCPNSPYVWDGRGFSECFGDLLFVFTANLATVTMIAIFAMTTKHHRKTQRISLSERIVLDFVPTIGASLSVLEIILSMKTELDGHHVIFYKWLTSCSECVMWTSIIIFSRCAGDHSTICMGTLGYWWIVKSLLEIIHLLTVSSSLKVYMCAKEIFSVILNIIFCISIIVIRIKKSSSKSGLLEEPLLSEEEDLEEGCHGRPKGVTWSFWDHMMFNFMTHVMKLGIAKQLGSEDLLQLPNDMDVCSCLDIMSRCWDSQMRENNAGPSLFKSICCAYGWPYLCLGFLKVINDCLGFAGPLLLNKLIRFLQQGSGDWHGYVLAVLLGLISIIKSFLDTQYTFHLSKLKLKLRSSITTLIYQKCLWVSLAERSKFSDGEIQTFMSVDAERTINLCNCFHDMWSLPLQISLALYLLYTQVKFAFVSGVAITILLIPVNRWIAKLIAGATEKMMKEKDERIRKTGELLSYIRTIKMYAWEVIFSNWLMETRSSEVKHLAMRKYLDAWCVFFWATTPTLFSLFTFGLFALSGHQLDAATVFTCLALFNTLISPLNSFPWVINGLIDAMISIRRLSRFLSCPVAREIANSHLTLSSTDQPHWRKDVAVSFDDACCSWANSEEKELNLALNHVNLGLSRGSFIAVIGEVGSGKSSLLYSILGEMRNVRGSIIKDGTIAYAPQVPWILSGTIRENVLFGKSYDPNRYLDTIGACALDVDISMMTGGDMTYIGEKGVNLSGGQRARLALARAVYCSSDIVLLDDILSAVDAQVARWILQNAILGPLMQGKTRILCTHNIQAISSADMIVVMDKGCVKWQGSSADFQMSSYVAHSPLNEIDTSICNQEEACSSEVKLVSIEGDDSHSSKEAERITEVEKRKEGKVEYRVYKEYAMFSGWVITVVIFLSAILMQASKNGNDLWLSYWVDTSTGSSHNSTSFYLVVLSFFCILNSSLTLVRAFSFAFGGLQAAKKVHNRLLSMLTNAPVRFFDQTPVGRILNRLSSDLYTIDDSLPFILNILLANFVGLLGIAIVLSYTQVFFLLLLLPVWYIYTKIQLFYRSTSRELRRLDSVSRSPIYSSFTETLDGSSTVRAFMSEDHFFARFVEHLKLYQQTSYTEVNASLWLSLRLQLLAAFIVSFIALMAVIGSREKLPVRFGTPGLVGLALSYAAPIVSLLGSFLTSFTETEKEMVAIERALEYMDIPQEELLGPQSLSSDWPNNGIVQFQNVTLKYLPSLPAALRDITCTIEGGMQVGIIGRTGAGKSSVLNALFRLTPICAGSILVDGINIANIPVRDIRARFAIVPQSPFLFEGTIRQNLDPLQSSNDLKIWKTLEQCHVKEEVEAGGGLDAKIKESGLSFSVGHRQLLCLARALLKSSRVLCLDECTANIDTKTAAMLQKTISSECRGMTVITIAHRISTVLNMDRILILDHGNLVEQGNPQALLQDDHSVFSRFVKASTM* 1456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte1g00296 1455 Pfam ABC transporter 628 760 IPR003439 GO:0005524
Pte1g00296 1455 SMART AAA_5 637 811 IPR003593 GO:0016887
Pte1g00296 1455 SMART AAA_5 1244 1428 IPR003593 GO:0016887
Pte1g00296 1455 FunFam ABC transporter C family member 13 586 844 - -
Pte1g00296 1455 ProSitePatterns ABC transporters family signature. 735 749 IPR017871 GO:0005524|GO:0016887
Pte1g00296 1455 SUPERFAMILY ABC transporter transmembrane region 894 1205 IPR036640 GO:0005524|GO:0016020
Pte1g00296 1455 Gene3D - 1205 1453 IPR027417 -
Pte1g00296 1455 CDD ABC_6TM_MRP7_D1_like 289 574 - -
Pte1g00296 1455 FunFam ATP-binding cassette (ABC) transporter, putative 1204 1452 - -
Pte1g00296 1455 CDD ABCC_MRP_domain2 1216 1435 - -
Pte1g00296 1455 CDD ABCC_MRP_domain1 607 810 - -
Pte1g00296 1455 FunFam ATP-binding cassette subfamily C member 10 265 582 - -
Pte1g00296 1455 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 291 566 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pte1g00296 1455 SUPERFAMILY ABC transporter transmembrane region 279 585 IPR036640 GO:0005524|GO:0016020
Pte1g00296 1455 FunFam ABC transporter C family member 5 861 1201 - -
Pte1g00296 1455 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1218 1451 IPR003439 GO:0005524
Pte1g00296 1455 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1211 1443 IPR027417 -
Pte1g00296 1455 Gene3D - 583 845 IPR027417 -
Pte1g00296 1455 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 607 834 IPR003439 GO:0005524
Pte1g00296 1455 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 213 1452 - -
Pte1g00296 1455 CDD ABC_6TM_MRP7_D2_like 897 1195 - -
Pte1g00296 1455 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 599 821 IPR027417 -
Pte1g00296 1455 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 898 1183 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pte1g00296 1455 Pfam ABC transporter 1235 1382 IPR003439 GO:0005524
Pte1g00296 1455 Gene3D ABC transporter type 1, transmembrane domain 265 582 IPR036640 GO:0005524|GO:0016020
Pte1g00296 1455 Gene3D ABC transporter type 1, transmembrane domain 860 1201 IPR036640 GO:0005524|GO:0016020
Pte1g00296 1455 Pfam ABC transporter transmembrane region 899 1141 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pte1g00296 1455 Pfam ABC transporter transmembrane region 288 554 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte1g00296 Pte-Chr1 3339436 3352618 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte1g00296 638 817 Calmodulin-binding Proteins AT2G36910 34.694 4.20e-21 99.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte1g00296 K05674 - qsa:O6P43_027949 1989.54