Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte1g00260 ATAAGGAATTTCTGCATTATCGCTCATATTGACCATGGAAAATCAACTTTAGCTGATAAGCTGCTTCAGATTACGGGTACCGTAGAGAAAAGAGAAATGAAGGATCAATTTCTTGATAATATGGATTTGGAAAGAGAAAGAGGAATCACTATTAAGCTACAGGCAGCTCGAATGCGATATGTGTATGAAAAAGAACCATACTGCTTAAACCTAATTGATACACCAGGACATGTAGACTTCTCTTATGAGGTTTCTCGTTCAATCGCTGCATGTGAGGGTGCACTCCTTGTTGTTGATGCTTCTCAGGGAGTTGAAGCTCAGACTCTAGCTAATGTTTATTTGGCATTGGATAATACCCTGGAGATTATTACCGTTTTGAACAAGATAGATCTTCCAGGTGCTGATCCAGACCGTGTTATAAAGGAAATTGAAGAGGTTGTGGGGCTAGACTGCAGCAATGCCATATTGTGCTCTGCAAAGGAAGGAATAGGTATAATGGATATCCTGAATGCAATTGTTACAAGAATTCCTCCACCAAGTGATGCATCTGAAAAGCCATTGAGGGCCTTGATATTCGATAGTTACTATGATCCGTATAGAGGTGTTATTGTATATTTTCGAGTTGTAGATGGAACTGTAAAGAAAGGTGATAGAGTCTCATTTATGGCTAGTGGAAAGGACTATTTTGTTGATGAAATTGGTGTTTTATCTCCAAGTCAATTACAAGTTGAAGAACTGTATGCTGGTGAGGTGGGCTACCTTTCAGCTTCCATAAGAACAGTAGCTGATGCCAGGGTAGGTGACACCATTACTCATTATGGAAAAAGTGCTGAAAAATCTCTCCCTGGATATGAGGAAGCTACTCCAATGGTTTTCTGTGGCCTGTTTCCCGTTGATGCAGACCAATTTCCTGACTTAAGGGATGCACTTGAGAAACTGCAGCTTAATGATGCTGCATTGAAGTTTGAACCTGAGACTTCCAGTGCCATGGGTTTTGGCTTTAGATGTGGGTTTTTGGGGCTTCTACACATGGAAATTGTTCAGGAAAGACTTGAGAGAGAATACAATCTGAGCCTGATTACTACTGCTCCAAGTGTTGTTTATAGGGTTGAATGCTCTAATCCGTCTTTACTTCCTGAGCCTGGACAAAGAAAATCAATTGAGGAGCCAGTTGTTAAGATTGAGATCCTCACTCCAAAAGATTATATTGGTCCTCTAATGGAGTTGGCTCAAGATAGGAGAGGTGAGTTCAAGGAGATGAAATACATTACTGAAATCAGAGCAGCAATTACCTATGAATTACCATTATCTGAGATGGTGGGTGATTTCTTTGACCAGCTGAAGTCCAGAAGCAAGGGTTATACTAGCATGGAATACACCTTCATTGGTGATTTGATAAAACTTGACATACAAATTAATGGTGATCGTGTGGAACCATTGTCTACAATCGTACACAAGGACAAGGCATATATGGTGGGAAGGGCGTTGACACAAAAGCTTAAGGAGCTGATTCCACGGCAGATGTTTAAAGTACCAATTCAGGCATGCATCGGGGCAAAGGTAATTGCTAGTGAGGCTTTATCTGCTATAAGGAAGGATGTTTTGGCCAAATGCTATGGTGGAGACATTTCAAGGAAAAAAAAGTTGCTTAAAAAACAGGCCGAAGGGAAGAAAAGGATGAAGGCAATAGGTAAAGTCGATGTACCTCAAGAAGCATTCATGGCTGTTTTGAAACTCGAGAAGGAG 1746 0.4072 IRNFCIIAHIDHGKSTLADKLLQITGTVEKREMKDQFLDNMDLERERGITIKLQAARMRYVYEKEPYCLNLIDTPGHVDFSYEVSRSIAACEGALLVVDASQGVEAQTLANVYLALDNTLEIITVLNKIDLPGADPDRVIKEIEEVVGLDCSNAILCSAKEGIGIMDILNAIVTRIPPPSDASEKPLRALIFDSYYDPYRGVIVYFRVVDGTVKKGDRVSFMASGKDYFVDEIGVLSPSQLQVEELYAGEVGYLSASIRTVADARVGDTITHYGKSAEKSLPGYEEATPMVFCGLFPVDADQFPDLRDALEKLQLNDAALKFEPETSSAMGFGFRCGFLGLLHMEIVQERLEREYNLSLITTAPSVVYRVECSNPSLLPEPGQRKSIEEPVVKIEILTPKDYIGPLMELAQDRRGEFKEMKYITEIRAAITYELPLSEMVGDFFDQLKSRSKGYTSMEYTFIGDLIKLDIQINGDRVEPLSTIVHKDKAYMVGRALTQKLKELIPRQMFKVPIQACIGAKVIASEALSAIRKDVLAKCYGGDISRKKKLLKKQAEGKKRMKAIGKVDVPQEAFMAVLKLEKE 582
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte1g00260 582 FunFam Translation factor GUF1, mitochondrial 182 280 - -
Pte1g00260 582 Gene3D - 364 464 - -
Pte1g00260 582 CDD lepA_C 389 463 IPR035654 -
Pte1g00260 582 SUPERFAMILY EF-G C-terminal domain-like 387 463 IPR035647 -
Pte1g00260 582 Pfam Elongation factor Tu domain 2 201 271 IPR004161 GO:0005525
Pte1g00260 582 Gene3D - 1 181 IPR027417 -
Pte1g00260 582 FunFam Translation factor GUF1, mitochondrial 282 363 - -
Pte1g00260 582 CDD LepA 2 179 - -
Pte1g00260 582 FunFam Translation factor GUF1, mitochondrial 464 538 - -
Pte1g00260 582 FunFam Elongation factor 4 1 181 - -
Pte1g00260 582 Pfam Elongation factor Tu GTP binding domain 1 177 IPR000795 GO:0003924|GO:0005525
Pte1g00260 582 Pfam Elongation factor G C-terminus 387 462 IPR000640 -
Pte1g00260 582 PRINTS GTP-binding elongation factor signature 86 97 IPR000795 GO:0003924|GO:0005525
Pte1g00260 582 PRINTS GTP-binding elongation factor signature 122 131 IPR000795 GO:0003924|GO:0005525
Pte1g00260 582 PRINTS GTP-binding elongation factor signature 70 80 IPR000795 GO:0003924|GO:0005525
Pte1g00260 582 PRINTS GTP-binding elongation factor signature 3 16 IPR000795 GO:0003924|GO:0005525
Pte1g00260 582 PRINTS GTP-binding elongation factor signature 46 54 IPR000795 GO:0003924|GO:0005525
Pte1g00260 582 NCBIfam translation elongation factor 4 1 579 IPR006297 GO:0005525
Pte1g00260 582 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 39 54 IPR031157 -
Pte1g00260 582 Gene3D Translation factors 182 281 - -
Pte1g00260 582 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1 201 IPR027417 -
Pte1g00260 582 CDD EF4_III 289 364 - -
Pte1g00260 582 Gene3D - 465 538 IPR038363 -
Pte1g00260 582 SUPERFAMILY Translation proteins 161 283 IPR009000 -
Pte1g00260 582 NCBIfam small GTP-binding protein domain 3 170 IPR005225 GO:0005525
Pte1g00260 582 Pfam GTP-binding protein LepA C-terminus 472 578 IPR013842 -
Pte1g00260 582 SUPERFAMILY EF-G C-terminal domain-like 288 366 IPR035647 -
Pte1g00260 582 SMART EFG_C_a 386 470 IPR000640 -
Pte1g00260 582 PANTHER TRANSLATION FACTOR GUF1-RELATED 1 579 IPR006297 GO:0005525
Pte1g00260 582 CDD EF4_II 187 272 - -
Pte1g00260 582 Gene3D Elongation Factor G (Translational Gtpase), domain 3 282 363 - -
Pte1g00260 582 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 1 180 IPR000795 GO:0003924|GO:0005525
Pte1g00260 582 Hamap Elongation factor 4 [lepA]. 1 582 IPR006297 GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte1g00260 Pte-Chr1 2780628 2790511 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte1g00260 1 211 Eukaryotic Initiation Factors Gene Family AT3G22980 35.268 3.77e-26 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte1g00260 K21594 - qsa:O6P43_023443 1044.26