Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte1g00258 ATGGAGGAGGGACATTCTTCGAGGAGAAGCAGAAGCTCATCTTTCTTCAAAATCTTGATCAACCGAGACTTTGCAACTAAATTGAAACTTCCATCACTATTTGTTCGCAACTATGGTAAAGATTTTCTTAATCAGAAAGCTTCTCTTCGAGTTTCGTGGAATAGAACATGGGAAGTTGAAGTAAAAAGGGATAAGAAACGTTTGTTTTTCTATAATGGCTGGGACAAATTTGTGAATGACAATTGCTTGAAGATTGGGGAGTTTCTTGTTTTCAAATATAGTGGAGATTCCAAATTCAAAGTCACAATATATGGTACTCACTGCTGCGAAAGAGAAGCTGGTATTACTTCAGAGAAAAAGCCCCAACTCAAACCTGTGAAAGTGGAAACTGTTGATATTGAATCTGATTCTTCTGCTAATGACTCCGATGGGGCCGATGAAACGGCTAATAAATCACTAGGAGAAAGAAGCAAAGCAAGAAATGTTCGCCATCATGAGAGTGAAGCAAAGAAGTTCACTTCAAATAATCCATATTGTTATATGGTGCTGTCCCAAACATCAGTTACAAAGAGTATCCTGTACCTTCCTGTGTTTTTTAGGGAACATTTGAATAAGGCAAAGGATACTGTTAAACTAGAGACTCCGGAAAAAACTTGGACTGTGAGGTTACTTCGCCGTTTTAAATGTGCATTTGGTAGCGGCTGGGGAGGCTTTGTGAAAGAGAATGGATTGAAAGTTAAAGATATTTGCATAATTGAGTTAGTAAACACAGATGATGTTTGCAATTACACATGTAAAGTTCATATATTTAGATGTTGA 819 0.3736 MEEGHSSRRSRSSSFFKILINRDFATKLKLPSLFVRNYGKDFLNQKASLRVSWNRTWEVEVKRDKKRLFFYNGWDKFVNDNCLKIGEFLVFKYSGDSKFKVTIYGTHCCEREAGITSEKKPQLKPVKVETVDIESDSSANDSDGADETANKSLGERSKARNVRHHESEAKKFTSNNPYCYMVLSQTSVTKSILYLPVFFREHLNKAKDTVKLETPEKTWTVRLLRRFKCAFGSGWGGFVKENGLKVKDICIIELVNTDDVCNYTCKVHIFRC* 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte1g00258 272 MobiDBLite consensus disorder prediction 148 168 - -
Pte1g00258 272 ProSiteProfiles B3 DNA-binding domain profile. 13 107 IPR003340 GO:0003677
Pte1g00258 272 CDD B3_DNA 177 271 IPR003340 GO:0003677
Pte1g00258 272 SUPERFAMILY DNA-binding pseudobarrel domain 10 109 IPR015300 -
Pte1g00258 272 SMART B3_2 180 268 IPR003340 GO:0003677
Pte1g00258 272 SMART B3_2 15 107 IPR003340 GO:0003677
Pte1g00258 272 MobiDBLite consensus disorder prediction 134 168 - -
Pte1g00258 272 Gene3D - 158 272 IPR015300 -
Pte1g00258 272 CDD B3_DNA 15 104 IPR003340 GO:0003677
Pte1g00258 272 PANTHER B3 DOMAIN-CONTAINING 6 258 - -
Pte1g00258 272 SUPERFAMILY DNA-binding pseudobarrel domain 174 270 IPR015300 -
Pte1g00258 272 ProSiteProfiles B3 DNA-binding domain profile. 178 272 IPR003340 GO:0003677
Pte1g00258 272 Gene3D - 6 109 IPR015300 -
Pte1g00258 272 Pfam B3 DNA binding domain 183 270 IPR003340 GO:0003677
Pte1g00258 272 Pfam B3 DNA binding domain 15 103 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte1g00258 Pte-Chr1 2713593 2716385 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte1g00258 14 266 B3 DNA Binding Superfamily AT2G35310 25.887 9.96e-21 87.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Pte1g00258 B3 4.4e-12 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte1g00258 - - pcin:129291410 130.568