Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte1g00254 ATGAGGCTCAGCACTTGGGTTAGTTCAGTATTTATTGGTATCAGTACACTATTGCTACTCGGTTGTGGAGTTGTTTATGGTACCACAAGTGATATATTTTGCTTGAGAAGCATACAGGTATCGCTTCAGGATCCTAATAAGTATCTGGCTGCTTGGAATTTTGACAACAATACAGACGGCTTTATCTGTAGATTTACGGGGGTCGAATGCTGGCATCCTGATGAGAATAAGGTTTTGAACCTGAAGCTTGCGAATATGGGACTTAAGGGTCATTTTCCAATTGGAGTTCAAAATTGCTCAAGCATGACCGGGTTAGATCTATCAAATAATGAACTTTCTGGAACAATTCCAGAAAACATATCTCAGGTCATTAAGTATGTTACCAGTCTTGATCTTTCGTCAAACAGTTTCACTGGTGGGATCCCTAAAAGTCTTTCCAACTGTTTGTATCTTAACACACTTAAGCTTAACGATAACAGGCTGACTGGTCCGATACCTCTTGAACTTAGTTCGCTTTCACGTATTACTGAATTCAGTGTTGCCAACAATCAGTTGACCGGACCTATCCCTAACTTAAAAGGTGCCACTGCGGATAGTTATGCCAGCAATCCTGGACTCTGTGGCGTTCCCTTGCAGCCTTGCCAACAAGCTTCAAAGCGTAACACTAACACTGGAATCATAGCTGGGACAGCTGTTGGTGGGGTGATAATTGCAGCTTTGCTTTTAGGAGTCTTTATGTTCTTCTATGTTCGTAGAGTGTCTATAAGGAAGAAAGAAGAGGATCCTGAAGGTAATAAATGGGCAAGGATTTTGAAAGGAACAAAAGGAATAAAGGTTTCAATGTTTGAGAAGTCAGTTTCAAAAATGAATTTAAGTGATCTTATGCAAGCCACTAACAACTTCAGCAAAGACAACATTATTGGTACAGGAAGGACTGGAACAATGTATAGAGCTGAGCTTGGGAATGGCACTGCCTTCATGGTTAAGAGATTGCAGGAGTCACAACACTCTGAGAAGGAATTTATATCTGAGATGTCGACACTTGGGAATGTAAGACATCGTAATTTAGTATCTCTTTTAGGTTTTTGTGTGGCTAAGAAGGAGAGGCTTTTGGTCTATGAACACATGCCAAATGGCACTCTCCATGATAGGCTACATCTTGCTGAAAGCGACAAGGGCTTGGATTGGCCTCAAAGGCTCAAAATTGCAATTGGGACAGCCAGAGGATTGGCTTGGATGCATCATAACTGTAACCCTCGTATTCTTCACCGCAACATAAGCTCAAAATGCATCTTGTTGGGTGCAGATTTTGAGCCCAAGATTTCCGATTTTGGCCTTGCTAGGCTGATGAATCCAGTAGATACTCACTTAAGTACCTTTGTCAATGGGGAATTTGGCGATCTAGGTTATGTTGCTCCTGAGTATACAAGAACTCTGGTGGCTACACCAAAAGGAGATATATATAGTTTTGGTATTGTACTACTTGAGTTAGTAACAGGTGAAAGACCTACCACGGTGAGCAAAGCTCCTGAAAGCTTTAAAGGGAATCTGGTAGAGTGGATAAATCAGCTCTCAAGCAACTCTCAACTCCGTGATGCCATTGACACGAATTTGGTTGGGAAAGGTGTTGATAGTGAGCTTTTCCAATTTCTTAAGGTCGCATGCAACTGTGTTTTACCAACTGCAAAGGAGAGACCTACAATGTATGAAGTTTACCAACTTCTACGAGCTATTGGTGAGAAATACAATTTTACAACAGAGGATGAAATATTGTTGCCCTCGGATGCTGGAGATGTAGAGTTAGAAGAACTTATAGTAGCTCAATAA 1827 0.4122 MRLSTWVSSVFIGISTLLLLGCGVVYGTTSDIFCLRSIQVSLQDPNKYLAAWNFDNNTDGFICRFTGVECWHPDENKVLNLKLANMGLKGHFPIGVQNCSSMTGLDLSNNELSGTIPENISQVIKYVTSLDLSSNSFTGGIPKSLSNCLYLNTLKLNDNRLTGPIPLELSSLSRITEFSVANNQLTGPIPNLKGATADSYASNPGLCGVPLQPCQQASKRNTNTGIIAGTAVGGVIIAALLLGVFMFFYVRRVSIRKKEEDPEGNKWARILKGTKGIKVSMFEKSVSKMNLSDLMQATNNFSKDNIIGTGRTGTMYRAELGNGTAFMVKRLQESQHSEKEFISEMSTLGNVRHRNLVSLLGFCVAKKERLLVYEHMPNGTLHDRLHLAESDKGLDWPQRLKIAIGTARGLAWMHHNCNPRILHRNISSKCILLGADFEPKISDFGLARLMNPVDTHLSTFVNGEFGDLGYVAPEYTRTLVATPKGDIYSFGIVLLELVTGERPTTVSKAPESFKGNLVEWINQLSSNSQLRDAIDTNLVGKGVDSELFQFLKVACNCVLPTAKERPTMYEVYQLLRAIGEKYNFTTEDEILLPSDAGDVELEELIVAQ* 609
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte1g00254 608 Gene3D Phosphorylase Kinase; domain 1 263 375 - -
Pte1g00254 608 Gene3D Ribonuclease Inhibitor 30 216 IPR032675 -
Pte1g00254 608 SUPERFAMILY L domain-like 31 194 - -
Pte1g00254 608 CDD TM_EGFR-like 220 258 - -
Pte1g00254 608 ProSiteProfiles Protein kinase domain profile. 301 585 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pte1g00254 608 CDD STKc_IRAK 307 575 - -
Pte1g00254 608 Pfam Protein tyrosine and serine/threonine kinase 304 573 IPR001245 GO:0004672|GO:0006468
Pte1g00254 608 Gene3D Transferase(Phosphotransferase) domain 1 376 592 - -
Pte1g00254 608 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 376 589 - -
Pte1g00254 608 FunFam Inactive LRR receptor-like serine/threonine-protein kinase BIR2 262 375 - -
Pte1g00254 608 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 55 191 - -
Pte1g00254 608 SUPERFAMILY Protein kinase-like (PK-like) 279 575 IPR011009 -
Pte1g00254 608 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 22 - -
Pte1g00254 608 Pfam Leucine rich repeat N-terminal domain 30 71 IPR013210 -
Pte1g00254 608 FunFam Nuclear pore complex protein NUP107 28 191 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte1g00254 Pte-Chr1 2680975 2684693 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte1g00254 24 589 Receptor kinase-like Gene Family AT3G28450 45.739 2.66e-176 511
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xa Pte1g00254 PK_Tyr_Ser-Thr 2.2e-37 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte1g00254 - - qsa:O6P43_026768 884.404