Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte1g00224 ATGGGACCTAACGTGGGTTCTATGTTTTCCGTTGCAAAACAAGCAGAACTATTGCGAAAAGATGGAAACAGTTACTTCAAGAAAGACCGATTTGGAGCCGCCATAGATGCGTATACGGAGGCAATTGCTTTATGTCCTAATGTTCCTGTGTATTGGACTAATCGTGCACTGTGCTATCTCAAGCGGAATAATTGGACAAGAGTAGAAGAAGACTGTATAAAAGCTATTGAACTTGACAACAAATCAGTCAAGGCTCACTATATGTTAGGACTTGCATTGCTTCAGAGAAGGGAATATTCGAAGGGAGTAAAGGAATTACAAAAGGCCTTGGATCTTGGGAGAGGTGCTGATTCCAAAGGGTACATGGTTGAGGAGATCTGGCAGGAGCTATCAAAAGCAAAATACATGGAGTGGGAACAAGAATCTTCTAAGCGATCATGGGAATTGCAAAACTTGAAAGAAGCTTGTGAGACTGCCCTCCGTGAAAAGCGTTTTTTAGACAATTCTGAAGTGGATTTAGTTTCAGATTATGGTAGCTATTCACATCAATTGGAGGCTTTAGGAAGACTATTCAACAAAGCTGCAGAAGCTGACGTTCCAACTGAGGTGCCAGATTATTTATGCTGCAGGATAACGCTTGATATTTTCCGTGATCCTGTAATCACTCCATGTGGGATCACTTATGAAAGGGCTGTGATTCTTGACCATCTTGAGAAGGTTGGCATGTTTGATCCAGTGACACGTGAACCCCTCAAACCGTCACAGTTGGTGCCAAACTTGGCCATAAAGTTAGCAGTGCAGGCATTCTTGGATACACATGGATGGGCCTATAAGAATGGCTGA 843 0.427 MGPNVGSMFSVAKQAELLRKDGNSYFKKDRFGAAIDAYTEAIALCPNVPVYWTNRALCYLKRNNWTRVEEDCIKAIELDNKSVKAHYMLGLALLQRREYSKGVKELQKALDLGRGADSKGYMVEEIWQELSKAKYMEWEQESSKRSWELQNLKEACETALREKRFLDNSEVDLVSDYGSYSHQLEALGRLFNKAAEADVPTEVPDYLCCRITLDIFRDPVITPCGITYERAVILDHLEKVGMFDPVTREPLKPSQLVPNLAIKLAVQAFLDTHGWAYKNG* 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte1g00224 280 Coils Coil 149 169 - -
Pte1g00224 280 PANTHER E3 UBIQUITIN-PROTEIN LIGASE CHIP 10 278 IPR045200 GO:0000209|GO:0061630
Pte1g00224 280 SUPERFAMILY RING/U-box 197 277 - -
Pte1g00224 280 Pfam Tetratricopeptide repeat 22 47 IPR019734 GO:0005515
Pte1g00224 280 SMART tpr_5 15 48 IPR019734 GO:0005515
Pte1g00224 280 SMART tpr_5 49 82 IPR019734 GO:0005515
Pte1g00224 280 SMART tpr_5 83 116 IPR019734 GO:0005515
Pte1g00224 280 ProSiteProfiles U-box domain profile. 202 276 IPR003613 GO:0004842|GO:0016567
Pte1g00224 280 SUPERFAMILY TPR-like 14 113 IPR011990 GO:0005515
Pte1g00224 280 Pfam U-box domain 203 275 IPR003613 GO:0004842|GO:0016567
Pte1g00224 280 SMART Ubox_2 206 269 IPR003613 GO:0004842|GO:0016567
Pte1g00224 280 Gene3D Tetratricopeptide repeat domain 10 145 IPR011990 GO:0005515
Pte1g00224 280 ProSiteProfiles TPR repeat profile. 83 116 IPR019734 GO:0005515
Pte1g00224 280 ProSiteProfiles TPR repeat profile. 15 48 IPR019734 GO:0005515
Pte1g00224 280 CDD RING-Ubox_CHIP 203 273 IPR045202 -
Pte1g00224 280 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 201 279 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte1g00224 Pte-Chr1 2416733 2421352 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte1g00224 15 280 U-box Gene Family AT3G07370 68.657 9.98e-138 388
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte1g00224 K09561 - bvg:104884045 436.417