Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte1g00223 ATGGAGAATGATATTTTCATGAATGCTGGAATTCCGCCACCATTGCAATTTGAACCATCCTCACTGGCCGCAATGTCATCTTGGCAATCATTGTCTTCTTCTGCTTTGAAAATTCAACAAACCACAGAACTGAATTCTACCTCTGATTTGTTTAATTCCACATGGGGAAAAAGTACAATGGATCATCAAAGTGTTCATAACTTTGATTCAGGACTAGGCTCAATGGTGTCGTCACCAGCAGCTTCAAATTCCAACATCCCCAATGACAGTTATTTCATCAGAGAATTGATAGGAAAATTGGGCAACATTGGAAGCTCTGCTCCTGAGATCTCACCTCATCCACAAACTCTGATAGCTTCTAGTGCTAACACTTCATGTTATAGCACTCCATTGAGTTCTCCACCCAAGATGAACAGGCCAGTGATAAATCAGAATTTTCCCAATTTGGTAAAGTCAATACCTTTGAGTTCAAGTGTAGCAGAATTCTCAGCTGACCCCGGATTTGCAGAGAGAGCTGCAAAGTTCTCTTGCTTTGGAAGCAGGAGTTTCAACAGAAGAACAAGCCAAATTGGGGTGAATCGTAATGAATTCAACAACAGATCTAATCTTCCATTAATGGCAAATGGAAAGCTTCAAAGAGTTGCAAGTAGCCCTTCTCTGAAAGTTTTTGGATTACAGAATGGAGTGCAGGGGACCAAGAAGCAGAGTCTCATGGAGTTGACCAATTCTGTAGAGGAATCTACTGTTTCTGAACAAACCCCACACGGGGATTCAGCTGGAAAAGCGTGCGGTGATTTGAATTCTAGAAAGAGAAAAGCTTCTTCCAAAGGAAAAGGCAAGGAAAGTGCGTCATCACCAAATACCCCTAAGGTGGTTGAAGATAACGTATCCTTAAACCCGAAGCGGTGTAAGGCGAATGAGAACGATAAGAATGGAGATGATGCCGCTAAGGCCGAGGAAGAACCAAGTGGTAATGGAGGAGATGAGAAAGAGAACAAGAGCAGTCCGAAACCGCCTGAGCCTCCCAAAGACTATATTCATGTCAGAGCAAGAAGAGGCCAAGCTACTGATAGCCATAGTCTTGCAGAAAGAGTCCGAAGAGAGAAGATCAGTGAGAGGATGAAACTTCTTCAAGACCTTGTACCTGGTTGCAATAAGGTTACTGGGAAAGCACTGATGCTTGATGAGATTATAAACTATGTTCAGTCATTGCAGAGACAAGTTGAGTTTCTCTCTATGAAAATGGCTTCTGTGAATACTAGGATGGACTGTAGCATAGACCATCTCATGTCAAAGGATGTGAGTACATTATAA 1314 0.4231 MENDIFMNAGIPPPLQFEPSSLAAMSSWQSLSSSALKIQQTTELNSTSDLFNSTWGKSTMDHQSVHNFDSGLGSMVSSPAASNSNIPNDSYFIRELIGKLGNIGSSAPEISPHPQTLIASSANTSCYSTPLSSPPKMNRPVINQNFPNLVKSIPLSSSVAEFSADPGFAERAAKFSCFGSRSFNRRTSQIGVNRNEFNNRSNLPLMANGKLQRVASSPSLKVFGLQNGVQGTKKQSLMELTNSVEESTVSEQTPHGDSAGKACGDLNSRKRKASSKGKGKESASSPNTPKVVEDNVSLNPKRCKANENDKNGDDAAKAEEEPSGNGGDEKENKSSPKPPEPPKDYIHVRARRGQATDSHSLAERVRREKISERMKLLQDLVPGCNKVTGKALMLDEIINYVQSLQRQVEFLSMKMASVNTRMDCSIDHLMSKDVSTL* 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte1g00223 437 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 250 433 IPR024097 GO:0006355
Pte1g00223 437 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 352 422 IPR036638 GO:0046983
Pte1g00223 437 Pfam Helix-loop-helix DNA-binding domain 358 405 IPR011598 GO:0046983
Pte1g00223 437 MobiDBLite consensus disorder prediction 239 345 - -
Pte1g00223 437 SMART finulus 360 410 IPR011598 GO:0046983
Pte1g00223 437 MobiDBLite consensus disorder prediction 279 294 - -
Pte1g00223 437 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 354 404 IPR011598 GO:0046983
Pte1g00223 437 CDD bHLH_AtBPE_like 344 429 - -
Pte1g00223 437 FunFam Basic helix-loop-helix transcription factor 351 423 - -
Pte1g00223 437 MobiDBLite consensus disorder prediction 303 345 - -
Pte1g00223 437 Coils Coil 401 421 - -
Pte1g00223 437 Gene3D - 351 426 IPR036638 GO:0046983
Pte1g00223 437 MobiDBLite consensus disorder prediction 239 255 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte1g00223 Pte-Chr1 2375328 2378121 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte1g00223 1 434 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G07340 46.818 1.14e-105 318
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pte1g00223 HLH 3.2e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte1g00223 - - qsa:O6P43_016947 474.167