LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pte1g00221	ATGGGTATCTCCAGAGATTCCATGCACAAGAGACGTGCCACTGGTGGCAAGAAGAAGGCTTGGAGAAAGAAGAGAAAGTATGAGCTTGGTCGCCAGGCAGGAAATACCAAGATCTCCAGCAACAAAACAGTCAGGAGGATACGTGTTAGGGGTGGCAATGTGAAGTGGAGGGCCCTTAGATTGGACACTGGCAATTACTCCTGGGGTAGTGAGGCTGTCACCCGCAAGACTCGTATTCTGGATGTGGTTTATAATGCCTCAAACAATGAACTTGTGCGCACTCAGACCCTTGTTAGGAGTGCTATTGTTCAGGTTGATGCAGCTCCATTCAAGCAATGGTATCTCCAGCACTATGGCATTGATCTTGGTAAGAAGAAGAAGCTTGCATCTAAGAAGGACTCTACAGAGGAGAGTGAAGCTGCTGCAGAGGAAACTAAGAAGAGCAACCATGTCCAGAGGAAGATTGAGAAGCGCCAGAAAGATCGTAAGCTTGACCTCCACATAGAAGAGCAGTTCGGTTCAGGCAGGCTGTTGGCCTGCATTTCTTCTCGCCCTGGTCAATGTGGCAGAGCTGATGGGTACATTCTGGAAGGAAAAGAACTTGAATTTTACATGAAGAAACTCCAACGGAAGAAAGGGAAGGGTGCTTCTGCTTAG	657	0.4795	MGISRDSMHKRRATGGKKKAWRKKRKYELGRQAGNTKISSNKTVRRIRVRGGNVKWRALRLDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVRSAIVQVDAAPFKQWYLQHYGIDLGKKKKLASKKDSTEESEAAAEETKKSNHVQRKIEKRQKDRKLDLHIEEQFGSGRLLACISSRPGQCGRADGYILEGKELEFYMKKLQRKKGKGASA*	219

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pte1g00221	218	MobiDBLite	consensus disorder prediction	133	160	-	-
	Pte1g00221	218	MobiDBLite	consensus disorder prediction	11	25	-	-
	Pte1g00221	218	Pfam	Ribosomal protein S8e	5	196	IPR022309	-
	Pte1g00221	218	Gene3D	-	32	160	-	-
	Pte1g00221	218	Gene3D	-	161	214	-	-
	Pte1g00221	218	CDD	Ribosomal_S8e_like	5	196	-	-
	Pte1g00221	218	ProSitePatterns	Ribosomal protein S8e signature.	11	30	IPR018283	GO:0003735\|GO:0005840\|GO:0006412
	Pte1g00221	218	PANTHER	40S RIBOSOMAL PROTEIN S8	1	214	IPR001047	GO:0003735\|GO:0005840\|GO:0006412
	Pte1g00221	218	FunFam	40S ribosomal protein S8	32	160	-	-
	Pte1g00221	218	FunFam	40S ribosomal protein S8	161	214	-	-
	Pte1g00221	218	NCBIfam	ribosomal protein eS8	1	198	IPR001047	GO:0003735\|GO:0005840\|GO:0006412
	Pte1g00221	218	MobiDBLite	consensus disorder prediction	1	25	-	-
	Pte1g00221	218	FunFam	40S ribosomal protein S8	109	175	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pte1g00221	Pte-Chr1	2363901	2367434	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pte1g00221	1	205	Cytoplasmic Ribosomal Protein Gene Family	AT5G59240	81.463	8.03e-123	345

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pte1g00221	K02995		-	gmx:100500112	385.956