Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte1g00220 ATGGAGGACGATTTCGTTATGCCACCAGCTGAGGGCATGAACGAAGACTTTGGTCTTGAAGACGAGAGTCCCATTCTCAAGGTTGGTGAGGAGAAGGAGATCGGCGAACAAGGTTTGAGGAAGAAGCTTGTTAAGGAAGGTGAAGGATGGGATACTCCTGAAGTGGGTGACGAAGTTGAAGTGCATTATACTGGTACATTGCTTGATGGGACCAAGTTCGATTCAAGCCGAGATCGGGGAACACCATTTAAGTTCACTCTTGGGCAAGGACAAGTAATTAAAGGATGGGACCAAGGAATCAAGACCATGAAGAAAGGTGAAAATGCTGTTTTGACAATCCCGCCTGAACTTGCTTATGGCGAGTCTGGATCTCCTCCAACAATCCCTCCCAATGCTACTCTGCAATTTGATGTTGAGTTACTCTCTTGGACAAGTGTGAAGGACATATGCAAGGATGGAGAATTATATAAGAAGATAATTGCTCAGGGCGAGAAATGGGAGAACCCAAAGGATGCTGATGAAGTATTAGTTAAATATGAAGCTCGGCTTGAGGATGGAACACTAGTTTCTAAATCTGATGGTGTGGAGTTCACGGTCAAAGAAGGTCTTTTTTGCCCTGCACTGTCAAGAGCTGTCAAAACCATGAAGAAGGGAGAGAAAGCTCTTCTTACAGTAAAACCTAAATATGGATTTGGGGAAAAAGGTAAGCCTGCACAAGGTGATGAAGCCGCTGTTCCACCTAATGCAAATCTGCAAGTTTCTCTTGAGTTGATGTCATGGAAGACTGTGTCAGAAATAACTGATGACAAGAAGGTCCTTAAGAAGATCCTGAAGGAAGGGGAGGGATATGAGCGACCAAATGAAGGAGCTATAGTAAAAGTGAAACTAACTGGTAAACTGGATGACGGTACTATATTTGTGAAGAAGGGCCATGATGAAGGAGAAGAGCTTTTCGAGTTTAAGACAGATGAGGAGCAAGTTATTGATGGGCTTGATCGAGCTGTTGTTACAATGAAAAAGGGTGAAGTTGCCTTGTTGACGGTTGCTCCAGAGTATGCTTTTGGGTTGTCAGGTTCCCAGCAAGAACTTGCAGTCGTTCCTCCTAACTCAACTGTGCATTACGAAGTGGAGATGGTATCATTTGAGAAGGAGAAGGAATCATGGGATATGAATACCCAAGAGAAGATTGACTCTGCAGGTAAGAAGAAGGAGGAAGGAAATGCATCGTTCAAAGCCGGAAAATATTTTAGAGCTTCAAAGAGATATGAAAAGGCTGTAAAGTTGATAGAATATGATAGTTCTTTCAGTGAAGAAGAAAAGAAGCAGTCAAAGGCTTTGAAAATTGCGTGTAATCTTAACAATGCTGCCTGCAAGTTGAAGCTTAAAGCTTATAAGGAAGCTGAGAAGTTGTGCACAAAGGTGCTGGAGCTAGAAAGCACAAATGTCAAGGCCTTATATAGAAGAGCTCAGGCATATATACAGCTGGCTGACTTGGATTTGGCTGAATTTGACATCAAGAAAGCGCTGGAGATTGATCCAAACAACAGGGATGTCAAGCTGGAATACAAGACATTGAAGGAGAAGATGAAAGAGTACAATAAGAAGCAAGCTCAATTTTATGGCAACATGTTCGCTAAGATGAACAAGTTGGGATCACTTGACATCAATAAGAGTGCAACCAAGGATGCTGAGCCAATGGCTGTGGACAGTAACGCGTGA 1719 0.4287 MEDDFVMPPAEGMNEDFGLEDESPILKVGEEKEIGEQGLRKKLVKEGEGWDTPEVGDEVEVHYTGTLLDGTKFDSSRDRGTPFKFTLGQGQVIKGWDQGIKTMKKGENAVLTIPPELAYGESGSPPTIPPNATLQFDVELLSWTSVKDICKDGELYKKIIAQGEKWENPKDADEVLVKYEARLEDGTLVSKSDGVEFTVKEGLFCPALSRAVKTMKKGEKALLTVKPKYGFGEKGKPAQGDEAAVPPNANLQVSLELMSWKTVSEITDDKKVLKKILKEGEGYERPNEGAIVKVKLTGKLDDGTIFVKKGHDEGEELFEFKTDEEQVIDGLDRAVVTMKKGEVALLTVAPEYAFGLSGSQQELAVVPPNSTVHYEVEMVSFEKEKESWDMNTQEKIDSAGKKKEEGNASFKAGKYFRASKRYEKAVKLIEYDSSFSEEEKKQSKALKIACNLNNAACKLKLKAYKEAEKLCTKVLELESTNVKALYRRAQAYIQLADLDLAEFDIKKALEIDPNNRDVKLEYKTLKEKMKEYNKKQAQFYGNMFAKMNKLGSLDINKSATKDAEPMAVDSNA* 573
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte1g00220 572 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 52 141 IPR001179 GO:0003755
Pte1g00220 572 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 167 257 IPR001179 GO:0003755
Pte1g00220 572 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 283 378 IPR001179 GO:0003755
Pte1g00220 572 Coils Coil 515 535 - -
Pte1g00220 572 Gene3D - 147 261 IPR046357 GO:0003755
Pte1g00220 572 Gene3D - 28 146 IPR046357 GO:0003755
Pte1g00220 572 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 154 264 - -
Pte1g00220 572 Pfam Tetratricopeptide repeat 482 515 IPR001440 GO:0005515
Pte1g00220 572 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 289 382 IPR001179 GO:0003755
Pte1g00220 572 SMART tpr_5 399 432 IPR019734 GO:0005515
Pte1g00220 572 SMART tpr_5 448 481 IPR019734 GO:0005515
Pte1g00220 572 SMART tpr_5 482 515 IPR019734 GO:0005515
Pte1g00220 572 FunFam Peptidylprolyl isomerase 262 384 - -
Pte1g00220 572 Gene3D Tetratricopeptide repeat domain 385 542 IPR011990 GO:0005515
Pte1g00220 572 FunFam Peptidylprolyl isomerase 387 542 - -
Pte1g00220 572 SUPERFAMILY TPR-like 387 547 IPR011990 GO:0005515
Pte1g00220 572 SUPERFAMILY FKBP-like 148 264 - -
Pte1g00220 572 ProSiteProfiles TPR repeat profile. 482 515 IPR019734 GO:0005515
Pte1g00220 572 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 56 144 IPR001179 GO:0003755
Pte1g00220 572 MobiDBLite consensus disorder prediction 1 21 - -
Pte1g00220 572 FunFam Peptidylprolyl isomerase 29 147 - -
Pte1g00220 572 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 172 261 IPR001179 GO:0003755
Pte1g00220 572 Gene3D - 262 383 IPR046357 GO:0003755
Pte1g00220 572 FunFam Peptidylprolyl isomerase 148 261 - -
Pte1g00220 572 SUPERFAMILY FKBP-like 265 397 - -
Pte1g00220 572 SUPERFAMILY FKBP-like 33 155 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte1g00220 Pte-Chr1 2358575 2362622 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte1g00220 1 547 Calmodulin-binding Proteins AT3G25230 79.417 0.0 879
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte1g00220 K09571 - aew:130762505 936.021