Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Pte1g00203 | ATGAGCACTCAAGGGGTTAGAGGCCCAACTATAAGAGAACACCGTAGAAGGAAGGCAGTACAGGAATTTGACCTTAATATAGCGCCACCCACTGAAAGTCGTGAACAGGAAGGGACTTCATCCCAAATTGAGCTTCATGATGTTCAAGTTTGTGAACAACAGCCAGCTCCAACTCCTCCAATGATTGATGTGGAAGCTATTGATGATGATGTTATTGAATCATCTCCCAGAGCCTTTGCTGAAGCTAAGAACAATTCAAGGAGGATTCGTGGGAGAACCATAGTTGCTGTCGATCTAGAAGATCAAATTAGAGTCACAAACAACCGTAACAAACGAAGAAGAGACTCGTCAAATGTACAAATAATCAATTGTGATCTTTACATAAACTTGGAAAGCAGTAGCAATTCTAAGAAACAGAATATTGGCAGGCAATCTCCACCTCCACCTCCAAAGGAGCCTACTTTTAACTGCCCAATATGTATGGGACCACTAGTGGAGGAAATGTCTACAAGGTGTGGTCACATTTTCTGTAAAGAATGCATTAAGGCTGCAATAAGAGCACAGGGTAAATGCCCTACGTGTAGGAAAAAGATTACAATGAAGGAGCTTATTAGGGTGTTCCTTCCAGCAGCTAGTTGA | 639 | 0.421 | MSTQGVRGPTIREHRRRKAVQEFDLNIAPPTESREQEGTSSQIELHDVQVCEQQPAPTPPMIDVEAIDDDVIESSPRAFAEAKNNSRRIRGRTIVAVDLEDQIRVTNNRNKRRRDSSNVQIINCDLYINLESSSNSKKQNIGRQSPPPPPKEPTFNCPICMGPLVEEMSTRCGHIFCKECIKAAIRAQGKCPTCRKKITMKELIRVFLPAAS* | 213 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Pte1g00203 | 212 | PANTHER | ELFLESS, ISOFORM B | 2 | 210 | - | - | |
| Pte1g00203 | 212 | MobiDBLite | consensus disorder prediction | 1 | 42 | - | - | |
| Pte1g00203 | 212 | SUPERFAMILY | RING/U-box | 156 | 201 | - | - | |
| Pte1g00203 | 212 | ProSiteProfiles | Zinc finger RING-type profile. | 157 | 195 | IPR001841 | - | |
| Pte1g00203 | 212 | ProSitePatterns | Zinc finger RING-type signature. | 172 | 181 | IPR017907 | - | |
| Pte1g00203 | 212 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 128 | 210 | IPR013083 | - | |
| Pte1g00203 | 212 | SMART | ring_2 | 157 | 194 | IPR001841 | - | |
| Pte1g00203 | 212 | Pfam | Zinc finger, C3HC4 type (RING finger) | 156 | 194 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Pte1g00203 | Pte-Chr1 | 2181183 | 2186370 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Pte1g00203 | 1 | 209 | C3H Transcription Factor Family | AT5G48655 | 53.302 | 4.68e-54 | 170 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Pte1g00203 | K22651 | - | qsa:O6P43_026661 | 289.271 |