Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte1g00181 ATGGTGTCAGGGTCAGGGATTTGCGCGAAGAGGGTTGTCATCGACGCCCGTAATCACATGCTTGGTCGTCTTGCTTCCATCCTGGCCAAGGAACTCCTCATTGGTCAGAAAGTTGTGGTTGTCAGGTGCGAAGAGATATGCATATCTGGTGGTCTCGTTAGGCAGAAGATGAAGTATATGAGGTTTCTCCGCAAACGCATGAACACCAAGCCTTCTCATGGTCCAATTCACTTCCGTGCCCCTGCTAAGATCCTGTGGCGCACCATCCGTGGGATGATACCGCACAAGACTAAACGCGGGGCTGCTGCACTTGCCCGATTGAAAGCTTATGAAGGAGTGCCTCCCCCATATGATAAGATGAAGAGAATGGTTGTCCCTGATGCTCTTAAGGTTTTGAGGCTCCAGAAGGGACATAAGTACTGCTTGTTAGGACGTCTCTCATCAGAGGTTGGATGGAACCATTATGAGACCATCAGGGAGTTGGAGAAGAAGAGAAAAGAGAAGGCCGAGGTAGCATATGAGAGAAAGAAACAGCTAAACAAACTACGGCAAAAGGCTGAGAAGATTGCTGAAGAGAAGCTTGGTTCCCAATTAGACATTCTTGCTCCCGTCAAGTACTGA 621 0.4879 MVSGSGICAKRVVIDARNHMLGRLASILAKELLIGQKVVVVRCEEICISGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKILWRTIRGMIPHKTKRGAAALARLKAYEGVPPPYDKMKRMVVPDALKVLRLQKGHKYCLLGRLSSEVGWNHYETIRELEKKRKEKAEVAYERKKQLNKLRQKAEKIAEEKLGSQLDILAPVKY* 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte1g00181 206 Hamap 50S ribosomal protein L13 [rplM]. 11 135 IPR005822 GO:0003735|GO:0005840|GO:0006412
Pte1g00181 206 PANTHER RIBOSOMAL PROTEIN L13 1 185 IPR005822 GO:0003735|GO:0005840|GO:0006412
Pte1g00181 206 NCBIfam 50S ribosomal protein L13 12 153 IPR005755 GO:0003735|GO:0006412|GO:0015934
Pte1g00181 206 ProSitePatterns Ribosomal protein L13 signature. 89 112 IPR023563 GO:0003735|GO:0005840|GO:0006412
Pte1g00181 206 Pfam Ribosomal protein L13 10 114 IPR005822 GO:0003735|GO:0005840|GO:0006412
Pte1g00181 206 Gene3D Ribosomal protein L13 8 154 IPR036899 GO:0003735|GO:0005840|GO:0006412
Pte1g00181 206 Gene3D - 156 206 - -
Pte1g00181 206 CDD Ribosomal_L13 12 113 IPR005822 GO:0003735|GO:0005840|GO:0006412
Pte1g00181 206 Coils Coil 169 189 - -
Pte1g00181 206 FunFam 60S ribosomal protein L13a 155 206 - -
Pte1g00181 206 SUPERFAMILY Ribosomal protein L13 12 154 IPR036899 GO:0003735|GO:0005840|GO:0006412
Pte1g00181 206 FunFam 60S ribosomal protein L13a-4 8 154 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte1g00181 Pte-Chr1 1858752 1861231 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte1g00181 1 207 Cytoplasmic Ribosomal Protein Gene Family AT5G48760 88.406 7.95e-138 382
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte1g00181 K02872 - pvy:116108982 367.081