Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte1g00177 ATGGATGGACCTGAGGAAGAAATTGCCGACCTATTTGTTTGCTGCGTTTGCCTGGATCTTTTGCACAAGCCAATTGTATTATCTTGCGGTCACATGTCCTGTTTCTGGTGTGTGCATAAGTCGATGGATAGTACGTGGAAGTCTCATTGTCCTATTTGCAGACACACATACTATCACTTTCCTAATGTTTGCCAAATGCTTCACTTTTTGCTCTTCAAGATGTATCCTGTTGCCTACAAGAGAAGAGACAGTCAAATGCTCGAAGAAGAAAAAGAAATGGGCTTTTTCTCACCACAATTTGATATTGCCGGTGGATCACAACCTAAGCCTGATAGTTCGAACAGCTTGCCCTCATCATCTGGTATGTATCATGAACCCAACTCATGTTCAGAACCTTTGATATCTTGGAATCAGAAAATATCAGTGGACACGAAGCAATGTAGTTTAGTTAGAGAAGGTAAAGAGGAAGAAAAAGTGCATAGATTATCAGAAGCCAGTGGGACTTCTTCAGTCGAAGAAATCAATCACCCTGAGCGAAAAGAGTCAATCTCAGTTGCTGATATGCTATGTACAGCATGCAATCAACTATTATGTCGTCCAGTTGTTCTTAATTGCGGTCATGCATACTGTGAAGTTTGTATTATTAACCAATCTGACGAGGTGCTTAAATGTCAACTTTGTCAAAGTGCTCATCCTAGGGGAGTTCCAAAAGTTTGCTTACCCCTTGATCAGTTCTTGCTGGAAAGATTTCCAAGTGAATATGCACGGAGAAGAGACACTGTCCAACTCAATGACATTAAACGCATGACTCCATCTACCTCTTCACAAGAGACCCCTGAAGAAGAAGACAGAGCACCATGGTGGTCTCATTCTAATTCAATTGTCCACTTTGGAGTTGGTTGCGATTGTTGTGGGATCTGTCCGATAGTTGGGGACAGGTACAGATGCAAAGATTGCATTGAAAAGATTGGTTTTGATCTTTGTGGTGATTGCTATAATGCTCAGTCCAAGCTTCCTGGACGTTTCAATCAGCAGCATAGGCCAGAACACCAGTTTGAGCATGTTCAGACAACAAACGAGATGGGTAATATTATACTGAGGATGGTCAGGGGACCATTTGGTGGGGGTCACATTGCCATTATCGATGATGGTTCACAAACTTCTGAAGTTGTATTTCGAGCTCCTGATTTCTCTGACAGTAATGATGACGAGCATGAGGCTGAAACTAACAATTGA 1236 0.4199 MDGPEEEIADLFVCCVCLDLLHKPIVLSCGHMSCFWCVHKSMDSTWKSHCPICRHTYYHFPNVCQMLHFLLFKMYPVAYKRRDSQMLEEEKEMGFFSPQFDIAGGSQPKPDSSNSLPSSSGMYHEPNSCSEPLISWNQKISVDTKQCSLVREGKEEEKVHRLSEASGTSSVEEINHPERKESISVADMLCTACNQLLCRPVVLNCGHAYCEVCIINQSDEVLKCQLCQSAHPRGVPKVCLPLDQFLLERFPSEYARRRDTVQLNDIKRMTPSTSSQETPEEEDRAPWWSHSNSIVHFGVGCDCCGICPIVGDRYRCKDCIEKIGFDLCGDCYNAQSKLPGRFNQQHRPEHQFEHVQTTNEMGNIILRMVRGPFGGGHIAIIDDGSQTSEVVFRAPDFSDSNDDEHEAETNN* 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte1g00177 411 SMART ring_2 14 53 IPR001841 -
Pte1g00177 411 SMART ring_2 190 227 IPR001841 -
Pte1g00177 411 MobiDBLite consensus disorder prediction 105 126 - -
Pte1g00177 411 SMART zz_5 295 341 IPR000433 GO:0008270
Pte1g00177 411 FunFam E3 ubiquitin-protein ligase PRT1 5 100 - -
Pte1g00177 411 SUPERFAMILY RING/U-box 289 355 - -
Pte1g00177 411 ProSiteProfiles Zinc finger ZZ-type profile. 296 360 IPR000433 GO:0008270
Pte1g00177 411 PANTHER UNCHARACTERIZED 6 367 - -
Pte1g00177 411 Gene3D - 289 357 IPR043145 -
Pte1g00177 411 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 137 257 IPR013083 -
Pte1g00177 411 Pfam Zinc finger, C3HC4 type (RING finger) 13 56 - -
Pte1g00177 411 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 93 IPR013083 -
Pte1g00177 411 FunFam E3 ubiquitin-protein ligase PRT1 290 355 - -
Pte1g00177 411 Pfam Zinc finger, ZZ type 296 336 IPR000433 GO:0008270
Pte1g00177 411 SUPERFAMILY RING/U-box 185 230 - -
Pte1g00177 411 ProSitePatterns Zinc finger RING-type signature. 205 214 IPR017907 -
Pte1g00177 411 SUPERFAMILY RING/U-box 8 63 - -
Pte1g00177 411 ProSiteProfiles Zinc finger RING-type profile. 14 54 IPR001841 -
Pte1g00177 411 MobiDBLite consensus disorder prediction 106 126 - -
Pte1g00177 411 ProSiteProfiles Zinc finger RING-type profile. 190 228 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte1g00177 Pte-Chr1 1823910 1828561 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte1g00177 5 54 C3H Transcription Factor Family AT1G74990 41.176 5.66e-07 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte1g00177 - - qsa:O6P43_026613 442.58