Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte1g00163 ATGGATGTCAAGGTTGAACAGAAGCTGTCAACAGGAGATCTGCATGCAACAGGGATACGGAAATACCATCAAGGAACTATTACTGCTGCTGAATTTGATGCTACGAATGAAGATGCCTTAGGAGTTGAGGTTGATAGACAGATCTGGCTTGAAAATGGAGAAGACGATTTACTTGGTGTAAATGATGCTTCAATGTTCTATGCTGACTTCCCTCCTCTTCCGGATTTCTCATGCATGTCATCCTCTTCATCCTCATCGTCAACACCAGTCCCAACTAAAGCCATGACTTGTTCATCAGCAGCCTCTACTGCATCTTCAGCTTCATCTGCTGCATCTTGGGCGGTGCTGAAGTCAGATGCAGAGCAAGATGTCGACAAGAACACCATCACCAATGACAACTATCAATGTCATGTAGGCCAGCATGATCATCCTCTTGGACCGCCACAAGGGTCTTTGTCTTCTACAGCTTCCATGGAGATACCACAACCGTCAACTGATCACAGTCAACAACAACTAGATGTTGTTGATTGTGTGGATGTCATGGAGAATTTCGGATACATGGATCTCTTGGGGAACTATGAATTGTTCGACCCATCATCGATTTTCCAAAGCGTAAATCCTTTGGATGATCAGTTTGCTAAGCATCAAGAGCATGAGCAATCACAGCAGCAGCAACTTCAGTATCAGCATGAGCAAGATCAACAAGAGCAGATTATGATGATGGTTCATCATCCACAACGAAGCAGTGAGAACAACAATAATCCACAAGAAGAAGAGGAGATGCTAGATCAGAGAGACCCTGATGACATGGGGAAAGTTTTCTTGGAGTGGCTTAAGTCAAACAGAGAAACTGTATCTGCCGATGACTTGAGGAGCGTGAAACTCAAGAAATCAACCATTGAATGTGCTACTAGGCGATTAGGTGGAGGAAAAGAAGCCATGAAACAATTGTTGAAGCTAGTGCTTGAATGGGTTCAAACAAATCATCTACAGAAAAGGAAGAACCCAAATGAAACACAACAAGTCAGTGTTATGTCCAATCAAGACTACCAAAGGCCAACAATGAATCCAGAGTTGTCTAACCCTAGCCCTAACAATAACACCAACTCTTCCTTCCACCCACCTGAACCAAATGCAAATCCTTGTGTGCAACCTCACTGGGTTCCTGCACCACCATATATGGCAGATCCATCTATAGTCATGGCTCCTCCCCCACCGTTCCCACAGCCAATGATAGGTGGGTACATCAGCGGCGATCCTTATTCAAATGGAACGGTCCCAAATTTCAATGGTGCACCACATACCATAACACCTTACCCGCCTCCTCATATGCCGCCGCCGCCTTCGAATTCTACAGAGTATCACATGCTTGAGCCTGCTCATTCATGGCCTCCCTCCCAGTTCCCAGTTGCTCCTCCTTACCCACCACAATTTCCGGATCCTAATCTCCAGCATGGGTCACCATTGGCACCAGCCTATCCAAGCTATGGGAATCCTTATCCGTATCAATATTTTCAAGGGCCTAGTGATAACAGAATGGTAATGAGATTAGGTCCCTCAGCAACGAAAGAAGCGAGGAAGAAGAGGATGGCAAGGCAGAGGCGGTATCTGCCACACAGCAGGCATCAACAGCATCATAGCCACAGCCATCAGAACACACCCCACGGTGCCATTGATCAACATGCAAGGCTTGGTACTGAAGCTTTTACCACTGCTGGTGGTTCTCATGGCAACGCAGGCAACTGGGTGTATTGGCCTTCGGTTGCTGCAGGGGGTGCATCGTCTGCATCGCCCATGGTCCAAACTGAAGCCCCACAAAACCATTCGGGTATGGATCGGATTGCCATGCAACCCCAGAATAATCAGAGCCGTGGCACCTCAGACAAGAGACAGGCATGGAAGCCGGAGAAGAACTTGAAGTTCCTTTTGCAGAAGGTGTTGAAGCAAAGTGATGTGGGAAATTTGGGGCGAATTGTTCTGCCGAAGAAGGAAGCAGAAACCCATCTTCCAGAATTGGAAGCAAGAGATGGCATTTCCATAGAAATGGAAGACATTGGAACTTCACGTGTATGGAACATGCGCTACAGGTACTGGCCTAATAACAAAAGCAGGATGTATCTGCTGGAGAACACAGGGGAGTTTGTGAGAGCCAATGGACTCCAAGAGGGAGACTTCATAGTCATATACTCAGATGTCAAATGCGGCAAATATATGATCCGAGGAGTGAAAGTGAGACAATCTACAAAGTCAGAGAACAAAAGGGCAGGGAAGTTGCAGAAAACCCAGCATGCAAACGCAACAAACAACACAGCTGGTAATTGTTCGACTACATCCTCCTCATCGCAGAGTCACAAAAAACAGTAG 2364 0.4649 MDVKVEQKLSTGDLHATGIRKYHQGTITAAEFDATNEDALGVEVDRQIWLENGEDDLLGVNDASMFYADFPPLPDFSCMSSSSSSSSTPVPTKAMTCSSAASTASSASSAASWAVLKSDAEQDVDKNTITNDNYQCHVGQHDHPLGPPQGSLSSTASMEIPQPSTDHSQQQLDVVDCVDVMENFGYMDLLGNYELFDPSSIFQSVNPLDDQFAKHQEHEQSQQQQLQYQHEQDQQEQIMMMVHHPQRSSENNNNPQEEEEMLDQRDPDDMGKVFLEWLKSNRETVSADDLRSVKLKKSTIECATRRLGGGKEAMKQLLKLVLEWVQTNHLQKRKNPNETQQVSVMSNQDYQRPTMNPELSNPSPNNNTNSSFHPPEPNANPCVQPHWVPAPPYMADPSIVMAPPPPFPQPMIGGYISGDPYSNGTVPNFNGAPHTITPYPPPHMPPPPSNSTEYHMLEPAHSWPPSQFPVAPPYPPQFPDPNLQHGSPLAPAYPSYGNPYPYQYFQGPSDNRMVMRLGPSATKEARKKRMARQRRYLPHSRHQQHHSHSHQNTPHGAIDQHARLGTEAFTTAGGSHGNAGNWVYWPSVAAGGASSASPMVQTEAPQNHSGMDRIAMQPQNNQSRGTSDKRQAWKPEKNLKFLLQKVLKQSDVGNLGRIVLPKKEAETHLPELEARDGISIEMEDIGTSRVWNMRYRYWPNNKSRMYLLENTGEFVRANGLQEGDFIVIYSDVKCGKYMIRGVKVRQSTKSENKRAGKLQKTQHANATNNTAGNCSTTSSSSQSHKKQ* 788
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte1g00163 787 ProSiteProfiles Ig-like domain profile. 71 153 IPR007110 -
Pte1g00163 787 MobiDBLite consensus disorder prediction 134 170 - -
Pte1g00163 787 MobiDBLite consensus disorder prediction 351 382 - -
Pte1g00163 787 CDD BfiI_C_EcoRII_N_B3 641 742 - -
Pte1g00163 787 MobiDBLite consensus disorder prediction 351 377 - -
Pte1g00163 787 SUPERFAMILY DNA-binding pseudobarrel domain 642 738 IPR015300 -
Pte1g00163 787 MobiDBLite consensus disorder prediction 746 787 - -
Pte1g00163 787 ProSiteProfiles B3 DNA-binding domain profile. 643 745 IPR003340 GO:0003677
Pte1g00163 787 Gene3D - 639 759 IPR015300 -
Pte1g00163 787 Pfam B3 DNA binding domain 644 740 IPR003340 GO:0003677
Pte1g00163 787 MobiDBLite consensus disorder prediction 218 233 - -
Pte1g00163 787 MobiDBLite consensus disorder prediction 212 233 - -
Pte1g00163 787 MobiDBLite consensus disorder prediction 527 549 - -
Pte1g00163 787 MobiDBLite consensus disorder prediction 245 267 - -
Pte1g00163 787 MobiDBLite consensus disorder prediction 147 170 - -
Pte1g00163 787 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 277 761 IPR044800 GO:0003700
Pte1g00163 787 FunFam B3 domain-containing transcription factor FUS3 639 754 - -
Pte1g00163 787 MobiDBLite consensus disorder prediction 521 557 - -
Pte1g00163 787 SMART B3_2 643 745 IPR003340 GO:0003677
Pte1g00163 787 MobiDBLite consensus disorder prediction 759 787 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte1g00163 Pte-Chr1 1666901 1670114 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte1g00163 43 785 B3 DNA Binding Superfamily AT3G24650 43.299 3.62e-161 483
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Pte1g00163 B3 9.6e-18 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte1g00163 K09287 - qsu:112028173 689.493