Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Pte1g00161 ATGTCAGATTCCCTTCCAATTTCTCCAGCCTCTGCAGATCACCATGAAATTCAAATCAGCACTCTTTTCATGGGCCTAATTGGTGTCATCACTGGAGCTATTGCAGTCATAACCTACCAGTGTATTACGGCTTGTTTCAGGCAAAGAACTGAAGAAAGGGAAGAAGAACCTGGTGTGCCTAATACTCAAATGCGTAGCAGAAGTATTGTTACAACGAATCCAACGGTGGCAATGCTTCCGGTTTCTCGGTACAGCAAGAATTTGAATGAGCAGACTTGTGCTGTGTGCTTGTCTGAGTTTAAAATCGGCGCGCGGATTCGGGTGCTGCCGATTTGCCTGCATGTATTTCATGTAAGCTGCATTGACAAATGGCTAAACCAGCATGCAAACTGCCCACTTTGTAGAAATGGGATTGCTGCAAATTCACATGATGTGGTTTTGGCAATGCCAGCTGACAACATTCAGACAACAATAGCATCACTGCATCTATACACGTGA 498 0.4458 MSDSLPISPASADHHEIQISTLFMGLIGVITGAIAVITYQCITACFRQRTEEREEEPGVPNTQMRSRSIVTTNPTVAMLPVSRYSKNLNEQTCAVCLSEFKIGARIRVLPICLHVFHVSCIDKWLNQHANCPLCRNGIAANSHDVVLAMPADNIQTTIASLHLYT* 166
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Pte1g00161 165 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 71 142 IPR013083 -
Pte1g00161 165 CDD RING-H2_EL5-like 93 135 - -
Pte1g00161 165 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 13 139 IPR044675 -
Pte1g00161 165 SMART ring_2 93 134 IPR001841 -
Pte1g00161 165 Pfam Ring finger domain 92 135 IPR001841 -
Pte1g00161 165 SUPERFAMILY RING/U-box 86 139 - -
Pte1g00161 165 ProSiteProfiles Zinc finger RING-type profile. 93 135 IPR001841 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Pte1g00161 Pte-Chr1 1661535 1662032 Transposed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte1g00161 19 153 C3H Transcription Factor Family AT2G27940 30.612 8.65e-19 78.6
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte1g00161 - - ghi:107892496 126.331