Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte1g00158 ATGTCTGAGGTTGAGCTATCTCGCTCGGAGAAGAAGAAGAAGCACCGGGACGTTTCAACTGCACCAACTGATTTTACCACAGAACCCACCACTGATCAAACCGACTTCATTAAGCCACAGAGCTACAGTAAACCTGTTGATGCTTCTGACTGGCCATTACTTCTCAAGAACTATGATCGGCTGAATGTGCGTACCGGTCATTTCACTCCTCTCCCAACTGGGTACTCACCATTGAAGCGCCCTCTTGCTGAGTACATCAGGTATGGTATTTTGAACCTTGACAAGCCTTCCAATCCATCTTCACATGAGGTGGTGGCATGGATTAAGAGGATACTAAGGGTTGAGAAGACTGGTCACAGCGGTACGCTTGATCCTAAGGTTACTGGGAATTTGATAGTTTGTATTGATAGGGCTACTAGGTTAGTGAAATCCCAACAGGGTGCTGGGAAAGAGTATGTCTGTGTTGCCCGATTGCATTCTACTGTGACTGATGTGGCTAAGGTGGCTCGGGCACTTGAGACATTGACTGGGGCTGTTTTTCAGAGGCCGCCATTGATTTCTGCTGTCAAGAGGCAGCTTAGGATTAGGACTATTTATGAAAGTAAATTGCTTGAGTTTGACCCAGTGAAGAACTTGGTTGTTTTTTGGATTTCTTGTGAGGCTGGGACGTATGTGAGGACAATGTGTGTTCATTTGGGTCTTCTTCTTGGTGTGGGAGGACATATGCAGGAGCTGAGGAGGGTCCGGTCTGGAATTTTGGGGGAGAAGGATAACATGGTCACTATGCACGATGTGTTGGATGCTCAGTGGGTATATGATAATTCTAAGGATGAGACTTATCTGAGAAGGGTTATTATGCCACTTGAGGTGGTGTTGACAAGTTATAAGAGATTGGTTGTGAAGGATTCTGCTGTGAATGCAATTTGCTATGGAGCGAAGTTGATGATTCCGGGGTTATTGAGGTTCGAGAATGACATCGAGGTAGGGGAGGAAGTGGTGATCATGACCACCAAAGGTGAAGCAATTGCTTTAGGAATTGCGGAAATGACAACTTCAGTGATGGCAACTTGTGATCATGGGGTGGTTGCTAAGATTAAGAGGGTAGTGATGGATAGGGATACTTACCCAAGAAAATGGGGATTAGGACCACGTGCATCTTTGAAGAAAAAGCTAATTGTGGAGGGGAAATTGAGTAAACATGGGAAGCCAAATGAGAAAACGCCTGCAGAATGGCTGAGAAATGTAGTTTTGCCAGCAGGGGGAGACAATATGATTGCAGCTGCTGCTGCAGAACCAGTTCCAGAGAAGGAGACAGAAGAGAAAGAAAAGGAGAATGTGGAGTGTCGTAAGAGAAAGTTGGACAAAGAGACTGAAAGCCATGATCCAGCTCCCAAAAAGAAGGCAAAGACTGAGAAATTCGAAGAGGCTGTGGAGGAGGGAAAAGTAAAAGTCAAAAAGGTCAAAGAGGATGAAGTGGATGGTAAAGTTGAGAAGAAAGAGAAAAAGAAAAAGAAGGATAAAGAGAGTGATGGAAATGAGACTTCTAAGGAGGAGAAAATTAAGAAGGATAAGAAAAAGAATGACACTGAAGCTGTTTCTCCAGATGTAGGAAAGGCTGGGAAGAAAAAGAAGAAGAAGAAAGACAGAGAGATTGAAGACGATGAAAAACCTGCAGATATTATTAACAGTAATGCTGGTACTGACAATCAAACTGAGGAGAAGAAGAAAAAACAGAAAGACAAAAAGAAGAAGGATAAAGATGCTGTCAACGGCTAG 1776 0.4386 MSEVELSRSEKKKKHRDVSTAPTDFTTEPTTDQTDFIKPQSYSKPVDASDWPLLLKNYDRLNVRTGHFTPLPTGYSPLKRPLAEYIRYGILNLDKPSNPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHSTVTDVAKVARALETLTGAVFQRPPLISAVKRQLRIRTIYESKLLEFDPVKNLVVFWISCEAGTYVRTMCVHLGLLLGVGGHMQELRRVRSGILGEKDNMVTMHDVLDAQWVYDNSKDETYLRRVIMPLEVVLTSYKRLVVKDSAVNAICYGAKLMIPGLLRFENDIEVGEEVVIMTTKGEAIALGIAEMTTSVMATCDHGVVAKIKRVVMDRDTYPRKWGLGPRASLKKKLIVEGKLSKHGKPNEKTPAEWLRNVVLPAGGDNMIAAAAAEPVPEKETEEKEKENVECRKRKLDKETESHDPAPKKKAKTEKFEEAVEEGKVKVKKVKEDEVDGKVEKKEKKKKKDKESDGNETSKEEKIKKDKKKNDTEAVSPDVGKAGKKKKKKKDREIEDDEKPADIINSNAGTDNQTEEKKKKQKDKKKKDKDAVNG* 592
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte1g00158 591 FunFam H/ACA ribonucleoprotein complex subunit CBF5 81 287 - -
Pte1g00158 591 MobiDBLite consensus disorder prediction 569 591 - -
Pte1g00158 591 Pfam tRNA pseudouridylate synthase B C-terminal domain 226 292 IPR032819 -
Pte1g00158 591 Gene3D PUA domain 49 379 IPR036974 GO:0003723
Pte1g00158 591 Pfam PUA domain 296 368 IPR002478 GO:0003723
Pte1g00158 591 MobiDBLite consensus disorder prediction 429 591 - -
Pte1g00158 591 CDD PseudoU_synth_hDyskerin 87 269 - -
Pte1g00158 591 SUPERFAMILY Pseudouridine synthase 49 293 IPR020103 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Pte1g00158 591 PANTHER CENTROMERE/MICROTUBULE BINDING PROTEIN CBF5 10 527 IPR004802 GO:0006396
Pte1g00158 591 MobiDBLite consensus disorder prediction 1 41 - -
Pte1g00158 591 Gene3D Pseudouridine synthase 81 287 - -
Pte1g00158 591 SMART pua_5 296 370 IPR002478 GO:0003723
Pte1g00158 591 Pfam DKCLD (NUC011) domain 49 105 IPR012960 -
Pte1g00158 591 MobiDBLite consensus disorder prediction 1 21 - -
Pte1g00158 591 MobiDBLite consensus disorder prediction 22 40 - -
Pte1g00158 591 MobiDBLite consensus disorder prediction 433 538 - -
Pte1g00158 591 Pfam TruB family pseudouridylate synthase (N terminal domain) 109 225 IPR002501 GO:0006396
Pte1g00158 591 Coils Coil 436 456 - -
Pte1g00158 591 SMART DKCLD_2 47 105 IPR012960 -
Pte1g00158 591 NCBIfam RNA-guided pseudouridylation complex pseudouridine synthase subunit Cbf5 55 380 IPR004802 GO:0006396
Pte1g00158 591 SUPERFAMILY PUA domain-like 295 376 IPR015947 -
Pte1g00158 591 ProSiteProfiles PUA domain profile. 295 370 - -
Pte1g00158 591 CDD PUA_Cbf5 294 368 - -
Pte1g00158 591 NCBIfam uncharacterized domain 2 292 367 IPR004521 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte1g00158 Pte-Chr1 1630263 1633286 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte1g00158 1 505 NAC Transcription Factor Family AT3G57150 75.494 0.0 704
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte1g00158 K11131 - thj:104816817 735.332