Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte1g00147 ATGGAAATGAAGGAGAGGCAACGCTGGAGAGCTGAAGAAGACGCATTGTTAGCTGCATATGTTAAACAGTTTGGTCCTAGGGAATGGCACCTTGTGTCACAGCGCATGAACACGCCCCTTAACAGGGATGCTAAATCCTGTTTGGAAAGGTGGAAAAATTATCTGAAACCTGGAATCAAGAAGGGTTCTCTCACTGAAGAAGAGCAACGTCTTGTCATTCGTCTTCAAGCTAAACATGGCAACAAGTGGAAGAAAATTGCAGCAGAACTCCCAGGTCGAACTGCTAAGAGACTAGGCAAGTGGTGGGAAGTGTTCAAGGAAAAGCAACAGAGAGAAAAGAAGGAGAACACTAAAGCAGTGGACCCTATTGAAGAAGGGAAGTACGATCATATCCTGGAAACATTTGCTGAAAAATTGGTGAAGGAAAGGACATCCCCATCTTATCTAATGGCTAGTTCCAATGGGGGATTTCTGCAGACCGATCCGCCGTCTTCTGCAGCAGCAATGCTTCCACCGTGGCTATCTAATTCTAATGGTACTGGCACGGTCAATGTCAGGCCGCCTCCATCTCCATCTGTGACTCTAAGCCTATCTCCATCAACAGTTGCAGCTCCAATACCATGGATGCAGCAGCAACCTGAGAGAGGGCCAGAAACTTGTGGTACTCCTCTTGTTCTGGGGAACATGCCCCATCATGGTTCTATGCCCACATGTGATAACATGGTCTTGTCTGAGTTGGTTGAATGCTGCAAAGAGTTGGATGAAGGCCACCGGGCTTGGGCGGCCCATAAGAAGGAGGCAGCCTGGAGGTTAAGAAGGGTGGAATTGCAATTGGATTCAGAGAAGGCATGCAGAAGAAGGGAAAAGATGGAAGATTTTGAATCCAAGATTAAAGCTCTCAGGGAAGAGCAAAAGGCTGCAATGGATATTATTGAAGCTGAATATAGAGAACAGTTAGCAACACTGAGGAGAGATGCAGAAAACAAGGAGCAAAAGCTGGCTGAGCAATGGGCTGCTAAGCACATGCGCCTCACTAAGTTTCTTGAACAGATGGGGTGCCGTCTAAGGCTGTCTGAGTCAAATGGTCGATGA 1092 0.4707 MEMKERQRWRAEEDALLAAYVKQFGPREWHLVSQRMNTPLNRDAKSCLERWKNYLKPGIKKGSLTEEEQRLVIRLQAKHGNKWKKIAAELPGRTAKRLGKWWEVFKEKQQREKKENTKAVDPIEEGKYDHILETFAEKLVKERTSPSYLMASSNGGFLQTDPPSSAAAMLPPWLSNSNGTGTVNVRPPPSPSVTLSLSPSTVAAPIPWMQQQPERGPETCGTPLVLGNMPHHGSMPTCDNMVLSELVECCKELDEGHRAWAAHKKEAAWRLRRVELQLDSEKACRRREKMEDFESKIKALREEQKAAMDIIEAEYREQLATLRRDAENKEQKLAEQWAAKHMRLTKFLEQMGCRLRLSESNGR* 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte1g00147 363 Coils Coil 290 310 - -
Pte1g00147 363 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 55 IPR017930 -
Pte1g00147 363 ProSiteProfiles Myb-like domain profile. 56 106 IPR001005 -
Pte1g00147 363 SUPERFAMILY Homeodomain-like 6 100 IPR009057 -
Pte1g00147 363 Pfam Myb-like DNA-binding domain 9 69 - -
Pte1g00147 363 PANTHER PROTEIN ROUGH SHEATH 2 HOMOLOG 3 359 - -
Pte1g00147 363 Coils Coil 312 336 - -
Pte1g00147 363 CDD SANT 65 106 IPR001005 -
Pte1g00147 363 Gene3D - 64 122 - -
Pte1g00147 363 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 56 110 IPR017930 -
Pte1g00147 363 ProSiteProfiles Myb-like domain profile. 1 55 IPR001005 -
Pte1g00147 363 SMART sant 5 57 IPR001005 -
Pte1g00147 363 SMART sant 60 108 IPR001005 -
Pte1g00147 363 FunFam MYB-related transcription factor 6 60 - -
Pte1g00147 363 Gene3D - 6 60 - -
Pte1g00147 363 CDD SANT 8 55 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte1g00147 Pte-Chr1 1518603 1519694 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte1g00147 3 355 MYB Transcription Factor Family AT2G37630 69.947 4.99e-172 482
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pte1g00147 Myb_DNA-bind_6 3.6e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte1g00147 K09422 - qsa:O6P43_016767 589.341