Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte1g00141 ATGGCGTCAATTGGCACTTCTTCATATTGGTGTTACAGATGCAATCGTTTCGTTTCTGCCCGTGTTCAAGGTCATCAGTCGGTTCTCTGTCCCGACTGTGGTTCTGGTTTTGTTGAAGAAATCAGAAGTCCTACTCGCTCACCCTTCAATCGATTTCCTCTAGAAACAATTCACGGTGCTAACAGGTTAAATTCCGAGCGAACTGGGAATCCAAGAGTGAGCTGGGTTCCAAGTAGTAGTGGGGATCGATCACCCTTTAACCCTGTGATAGTGCTCCGTGGACCTTCTGAGGGTGGTATAGTTGGAAACGGAAATGATTATGAAAGAGGAAACTTTGAGTTCTATTACGCCGAGGGTACTGGTTCAAGAATTCGGCCACTACCTGCAAGTGTTTCTGAATTCTTGATGGGTTCTGGGTTTGACAGCTTACTTGATCAGTTAGTTCGATTGGAGGTGAATGGACTTGGGAGGTTGGATCAACGGCGACCAGCATCAAAGGCGGCCATTGAATCAATGACTGTGATCAGAATTGTTGCTGCCCATGTTTCCACTGAGTCCCATTGCGCAGTTTGTGTAGAACCATTTGAGCTTGATATGGAAGCTCGTGAGATGCCTTGTAGGCACCTTTATCATGCTGATTGTATACTTCCTTGGCTTTCTATTCGTAATTCATGCCCTGTCTGTCGCCACGAGTTGCCTACTGAAGATAAAGGGAGTGGAAGTGGTGGTGGTGGTGGTGGAAATTCCCCAGTTTCTGATGAGGTTGGAGATGAAGATAGTGTAGGATTGACTATATTGAGATTGCCTGGCGGTGGTTTTGCTGTAGGGAGATTCACCGGGGGAAGACAAGCTGCAGAACTCGAACTTCCTGGTGTGTTCACCGAAATGGATGGTGGATATAGTGCCAGTACTAGTGGTTTACCAAGAAGGAACGTATGGGATTTTAATGCCAGAAGTACGCGCGGATCTCGTGGATTTGGTCGTGTATTCCGAAGTGTTGTATCATTCTTTGAGAGGCTGGGGAACTCCTCTCGTTCCTCTTCTGGGTCAGTTCGAAGGATAACGTCGAATGCTATGTTCACTAGGTCTTCAAGGAGGCGTGAGAGATGA 1110 0.4694 MASIGTSSYWCYRCNRFVSARVQGHQSVLCPDCGSGFVEEIRSPTRSPFNRFPLETIHGANRLNSERTGNPRVSWVPSSSGDRSPFNPVIVLRGPSEGGIVGNGNDYERGNFEFYYAEGTGSRIRPLPASVSEFLMGSGFDSLLDQLVRLEVNGLGRLDQRRPASKAAIESMTVIRIVAAHVSTESHCAVCVEPFELDMEAREMPCRHLYHADCILPWLSIRNSCPVCRHELPTEDKGSGSGGGGGGNSPVSDEVGDEDSVGLTILRLPGGGFAVGRFTGGRQAAELELPGVFTEMDGGYSASTSGLPRRNVWDFNARSTRGSRGFGRVFRSVVSFFERLGNSSRSSSGSVRRITSNAMFTRSSRRRER* 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte1g00141 369 MobiDBLite consensus disorder prediction 233 256 - -
Pte1g00141 369 MobiDBLite consensus disorder prediction 341 361 - -
Pte1g00141 369 ProSiteProfiles Zinc finger RING-type profile. 188 229 IPR001841 -
Pte1g00141 369 SMART ring_2 188 228 IPR001841 -
Pte1g00141 369 FunFam E3 ubiquitin-protein ligase RING1-like 150 235 - -
Pte1g00141 369 Pfam zinc-ribbon 8 41 IPR039525 GO:0061630
Pte1g00141 369 CDD RING-H2_RNF181 188 232 - -
Pte1g00141 369 SUPERFAMILY RING/U-box 168 234 - -
Pte1g00141 369 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 112 233 - -
Pte1g00141 369 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 155 235 IPR013083 -
Pte1g00141 369 Pfam Protein of unknown function (DUF1117) 261 358 IPR010543 -
Pte1g00141 369 MobiDBLite consensus disorder prediction 341 369 - -
Pte1g00141 369 Pfam Ring finger domain 187 229 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte1g00141 Pte-Chr1 1458576 1461782 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte1g00141 126 242 C3H Transcription Factor Family AT5G01980 44.444 1.79e-25 105
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte1g00141 K11982 - qsa:O6P43_016745 445.662