Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte1g00099 ATGTCGACCATACAGATGTCTCACATAGATTTAGAGCAAGGTAGTCATCGCAGGTCTGTTGCTGGGAGTGAAATGAGTGGCGAGGGAAGTCTGTGTTTCTCTGATGCTGAAGATGGTTCTTGCTACTCTCATTTCTATTCCACACATGGTGGGTCATATGATGAATATAGCTTTGACTGTGTAACTGATGCTGAGGTTGGAGATGTTTCAGATTCCAGTCGGAGAGTTTCTTTTGTTTCAGATTGTTCTGTGGAGGTTGAAATAGAAAGGGGAGTTCCTGAAATTAAGGTGCATTTGTCTAAAATTGAAAGAGATTGTAGGATTTGTCAAATGGGTTTAGAGAGTGATAGTCATGAATCTGGAATGCCGATTGAACTTGGTTGTTTATGTAAGGACGACTTAGCTGCTGCTCACAAGCATTGTGCAGAGGCATGGTTCAAAATTAAGGGAAATAGGACCTGCGAAATTTGTCATTCCGTTGCACAAAATGTTTTTGAAACTAGTGAGGAGTCTGCAGAGAATTCGAATGAGACGAACAACAATACTGCAGTAGTATCTGCAGTGCCAACATCTGCTCCTACTACCGAGACTCGAAGCTTCTGGCAAGGGCATCGATTCCTCAATTTTCTTCTTGCATGTATGGTTTTCGCATTTGTCATATCATGGCTTTTCCATTTTAATGTGCCATCATCGTAA 696 0.4152 MSTIQMSHIDLEQGSHRRSVAGSEMSGEGSLCFSDAEDGSCYSHFYSTHGGSYDEYSFDCVTDAEVGDVSDSSRRVSFVSDCSVEVEIERGVPEIKVHLSKIERDCRICQMGLESDSHESGMPIELGCLCKDDLAAAHKHCAEAWFKIKGNRTCEICHSVAQNVFETSEESAENSNETNNNTAVVSAVPTSAPTTETRSFWQGHRFLNFLLACMVFAFVISWLFHFNVPSS* 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte1g00099 231 SMART ringv_2 105 158 IPR011016 GO:0008270
Pte1g00099 231 PANTHER ZINC FINGER, RING-CH-TYPE 13 230 - -
Pte1g00099 231 MobiDBLite consensus disorder prediction 1 22 - -
Pte1g00099 231 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 94 171 IPR013083 -
Pte1g00099 231 SUPERFAMILY RING/U-box 103 161 - -
Pte1g00099 231 ProSiteProfiles Zinc finger RING-CH-type profile. 98 164 IPR011016 GO:0008270
Pte1g00099 231 Pfam RING-variant domain 106 157 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte1g00099 Pte-Chr1 1099695 1102139 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte1g00099 69 232 C3H Transcription Factor Family AT5G05830 65.060 8.05e-69 208
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte1g00099 - - qsa:O6P43_026440 353.599