Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte1g00098 ATGGAAGTGGAAGACACTACCTTGCATGATTCCGACTGCGGTGCCAACGCCGGTGACGGTGGCAGTGGGGATGAAGGGTTACTGGGTAGTGGTGATGGAAAAGGCCATGGGGAGGGAACCATTGATAGAGTCAAAGGACCATGGTCTCCGGAAGAAGACGCGATACTGAGTCGACTTGTGAGCAAGTTTGGAGCTAGGAATTGGAGTTTGATAGCCCGTGGAATCCCTGGGCGATCGGGCAAGTCTTGCCGTCTCCGGTGGTGCAATCAGCTTGACCCGGCGGTCAAACGCAAGCCCTTCACTGATGAGGAGGACCGGATCATAATTGCTGCGCATGAAATCCACGGAAACAAATGGGCAGCTATTGCTAAGCTTCTTCCTGGGAGAACAGATAATGCCATTAAGAATCACTGGAATTCAACCTTGAGGAGGCGGTTCCTGGAACTTGACAGGATAAAGTTGGAATCAGGAAATGGAATGGAGGATGTCAGCTTGGACAGAGCAAAAGCTTCATCTGAAGATACTCTATCATGTGGGGATGTTAACTCTATAAAATCCTTGGATGGAAGAGCTGTCTGCTCATTAGAGAATATAGATGATCAGTATGATGACAAAGTGCATAAGGAGGGTCCACTCAGTCAAGATGTAAAGGAGCAGCCTACTCTTTTCCGTCCAGTAGCACGTATCAGTGCATTTAGTGTATACAATTCTCTTGATGGTTCACAGCCTCCGTCAGTACATTCTAAGTCCCTACCAATGCAGGGACCTCTATTTCCAACATCAAGGGCAGATGTTGAAATTTGCAAGTTGTTTGAAGGTGTCAGTGGGGAAAGGACAGTACCTCAACATTGTGGCTATGGTTGCTGTGCTTCTGAAGATAGTAGGAATCAGCAAAGCTCCCTATTGGGGCCAGAGTTCGTTGAATTCTCTGAACCTCCTTCTTTCCCAAGTTTTGAGCTAGCTGCAATCGCTACAGATATAAGTAACCTGGCTTGGCTCAAAAGTGGATTGGAGAACAATAATGTCAAAATGATGGGAGATGTTGGTGGCAAAGTGATATATCATGAATCGCATGTGCATACAGGGCACTAG 1092 0.4707 MEVEDTTLHDSDCGANAGDGGSGDEGLLGSGDGKGHGEGTIDRVKGPWSPEEDAILSRLVSKFGARNWSLIARGIPGRSGKSCRLRWCNQLDPAVKRKPFTDEEDRIIIAAHEIHGNKWAAIAKLLPGRTDNAIKNHWNSTLRRRFLELDRIKLESGNGMEDVSLDRAKASSEDTLSCGDVNSIKSLDGRAVCSLENIDDQYDDKVHKEGPLSQDVKEQPTLFRPVARISAFSVYNSLDGSQPPSVHSKSLPMQGPLFPTSRADVEICKLFEGVSGERTVPQHCGYGCCASEDSRNQQSSLLGPEFVEFSEPPSFPSFELAAIATDISNLAWLKSGLENNNVKMMGDVGGKVIYHESHVHTGH* 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte1g00098 363 CDD SANT 47 89 IPR001005 -
Pte1g00098 363 SUPERFAMILY Homeodomain-like 42 138 IPR009057 -
Pte1g00098 363 ProSiteProfiles Myb-like domain profile. 92 142 IPR001005 -
Pte1g00098 363 ProSiteProfiles Myb-like domain profile. 40 91 IPR001005 -
Pte1g00098 363 FunFam Transcription factor MYB44 99 145 - -
Pte1g00098 363 CDD SANT 99 142 IPR001005 -
Pte1g00098 363 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 96 146 IPR017930 -
Pte1g00098 363 SMART sant 44 93 IPR001005 -
Pte1g00098 363 SMART sant 96 144 IPR001005 -
Pte1g00098 363 Gene3D - 44 96 - -
Pte1g00098 363 Pfam Myb-like DNA-binding domain 97 141 IPR001005 -
Pte1g00098 363 Pfam Myb-like DNA-binding domain 45 91 IPR001005 -
Pte1g00098 363 PANTHER MYB PROTEIN-RELATED 45 222 - -
Pte1g00098 363 MobiDBLite consensus disorder prediction 1 48 - -
Pte1g00098 363 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 40 95 IPR017930 -
Pte1g00098 363 FunFam MYB transcription factor 45 96 - -
Pte1g00098 363 Gene3D - 99 145 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte1g00098 Pte-Chr1 1090884 1094185 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte1g00098 37 363 MYB Transcription Factor Family AT3G09230 52.959 2.90e-113 333
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pte1g00098 Myb_DNA-bind_6 1.2e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte1g00098 K09422 - cave:132191932 478.789