Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte1g00061 ATGAAGGGTGGTGGTAAAGGCAAGGGAACTGTGAAGAACTCCACAGAACACTTGAAGCCCGTTGATGACAGAAAAATCGGAAAAAGAAAAGCTGCTGCTGCTGCCAAGCCTAGCAGGGCAAGCCAGCGACAGACTACAAAGAAGGGGAAGATGGCTTCAAAAGATCCCAACAAACCGAAGAGACCCCCAAGCGCTTTCTTCGTCTTCCTGGACGACTTCAGGAAGACGTTTAAGGAACAAAACCCTAATGTCAGATCAGTGTCAATGGTTGGGAGAGCTGGAGGAGAGAAGTGGAAATCAATGTCTGCAGAAGAGAAAGCTCCATATGAGGCGACGGCTGCAAAAAGGAAGGCCGAATATGGAAAACTCATGAATGCATATAACAGAAAAGAGAGCTCAAAAGAAGACATAGATGATTCGTTGTCAGAAGTGAATGGTGAAGATGATGAAGCTAGCGCAGAAGAGGAGCGCCAAGAAGTAGAGGAAGAGGAGGAAGAAGATGATGAAGACGACTGA 516 0.4671 MKGGGKGKGTVKNSTEHLKPVDDRKIGKRKAAAAAKPSRASQRQTTKKGKMASKDPNKPKRPPSAFFVFLDDFRKTFKEQNPNVRSVSMVGRAGGEKWKSMSAEEKAPYEATAAKRKAEYGKLMNAYNRKESSKEDIDDSLSEVNGEDDEASAEEERQEVEEEEEEDDEDD* 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte1g00061 171 Pfam HMG (high mobility group) box 59 128 IPR009071 -
Pte1g00061 171 SMART hmgende2 58 129 IPR009071 -
Pte1g00061 171 MobiDBLite consensus disorder prediction 126 140 - -
Pte1g00061 171 MobiDBLite consensus disorder prediction 12 30 - -
Pte1g00061 171 Coils Coil 143 170 - -
Pte1g00061 171 Gene3D High mobility group box domain 39 144 IPR036910 -
Pte1g00061 171 MobiDBLite consensus disorder prediction 1 65 - -
Pte1g00061 171 CDD HMG-box_AtHMGB1-like 60 120 - -
Pte1g00061 171 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 59 128 IPR009071 -
Pte1g00061 171 MobiDBLite consensus disorder prediction 141 171 - -
Pte1g00061 171 SUPERFAMILY HMG-box 44 128 IPR036910 -
Pte1g00061 171 PANTHER HIGH MOBILITY GROUP B PROTEIN 4-RELATED 16 169 IPR031061 -
Pte1g00061 171 MobiDBLite consensus disorder prediction 126 171 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte1g00061 Pte-Chr1 711929 713595 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Pte1g00061 HMG_box 2.1e-21 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte1g00061 K25507 - cpap:110820929 169.474