Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte1g00060 ATGCGCAAATCTTTTAAGGATTCTCTTAAAGCTCTTGAAGCTGACATTCAGTTCGCCAACACACTAGCTTCTGATTATCCACAAGAATATGACGGTGCTTGCCTGCAGATGAGATTGTCCTACAGTCCTGCTGCTCAGTTTTTCCTATTTCTTATACAGTGGACTGATTGTCACCTGGCTGGAGCCTTAGGATTGCTTAGGATTCTTATTTACAAGGCTTATGAAGATGGGAAGACAACCACGTGTATTTATGAAAGGAAAGCCAGTCTAAAAGAGTTTTACAGTGTCATATTTCCCTCTTTGTTGCAACTCCACAGAGGGATTACTGATGTAGAAGAACGGAAACAGAAACAAATTTGGGCCACCAAGTACAGAAAAAGAGATGAAATTAACAAAGGAAAGATGTCTGAAATTGACATTGAAAGAGAAGAAGAATGTGGTATTTGCATGGAGATGAACAGCAAGATTGTATTGCCCGATTGCAATCATTCAATGTGCATGAAATGTTACAGAGACTGGAGAGGACGCTCTCAATCATGCCCCTTCTGCCGGAACAGCCTGAAAAGGGTCAACTCTGGCGATCTCTGGATCTATACAAGCAACCTGGACATAGTGGACTTGAACTCAATTTCCAAGGAAAACTTGAAGAGGCTTTTTATGTACATTGAAAAATTGCCTCTCATCGTACTTGATCACGTTTATGTTCCCTACCCTCCTCAGCGTTGA 726 0.4132 MRKSFKDSLKALEADIQFANTLASDYPQEYDGACLQMRLSYSPAAQFFLFLIQWTDCHLAGALGLLRILIYKAYEDGKTTTCIYERKASLKEFYSVIFPSLLQLHRGITDVEERKQKQIWATKYRKRDEINKGKMSEIDIEREEECGICMEMNSKIVLPDCNHSMCMKCYRDWRGRSQSCPFCRNSLKRVNSGDLWIYTSNLDIVDLNSISKENLKRLFMYIEKLPLIVLDHVYVPYPPQR* 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte1g00060 241 ProSiteProfiles Zinc finger RING-type profile. 146 184 IPR001841 -
Pte1g00060 241 FunFam RING/U-box superfamily protein 124 193 - -
Pte1g00060 241 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 129 193 IPR013083 -
Pte1g00060 241 ProSitePatterns Zinc finger RING-type signature. 161 170 IPR017907 -
Pte1g00060 241 SUPERFAMILY RING/U-box 127 189 - -
Pte1g00060 241 Pfam Zinc finger, C3HC4 type (RING finger) 143 189 - -
Pte1g00060 241 SMART ring_2 146 183 IPR001841 -
Pte1g00060 241 PANTHER RING FINGER PROTEIN 41, 151 3 232 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte1g00060 Pte-Chr1 708256 710738 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte1g00060 90 188 C3H Transcription Factor Family AT5G01960 30.769 1.22e-07 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte1g00060 K25840 - zju:107430836 415.231