Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte1g00055 ATGGGGTCTCACCAAGAACCATGGCTGTTGGAAAACGGGAATGTCAAAGGTTTGAGCAGGGAAATGAGACATGGTCGGACAGCGCATAACATGTCGGCTACATCGTTAAGAAAGAAGTCTGACCTCACCCTTGTGTCAAAAGTTCGATTTGGGTTGCTCAGGAATGTGTTAGCGAATCTTCAAGAGGTTATACTGGGGACTAAGCTTTCAGTTTTGTTCCCTGCTATTCCTTTGGCAATCGTTGCCCAGTGTCTGGGATTTGCTAGACCATGGATCTTTGCTCTGAGCTTGCTGGGCCTTACTCCACTTGCTGAACGTGTCAGCTTCTTGACAGAGCAGATTTCCTTTTACACTGGTCCAACTGTTGGAGGGCTTATAAACGCAACTTGTGGCAACATTACCGAACTCATCATTGCAATATTTGCTTTGACCCAAAACAAAGTAGATGTTGTCAAGTATTCACTTTTGGGTTCAGTGCTTTCAAACCTCCTCCTTGTTCTTGGGACCTCTCTGCTTTGTGGTGGCTTGTCAAACCTCAGAACTGAGCAGAAATATGACAGAAGACAAGCCGATGTCAACTCGCTTATGTTGATGCTGGCCTTGCTGTGCCTCTTGTTGCCCATGCTCTATAGATATGCGGGTGCTTCCGTTGCAGCAAAACCAGTTTTACAATTGTCAAGGGTCACAAGCATAGTCATGCTGATTGCGTACTTCTGCTTCCTTATGTTTCAATTGTTTACACACAGAGAATTATTTGAAGCCCAAGAGGAAGGAGAAGATGATGATGATGCTGCAGAAGAAACAGCTGTACTTGGAGTGTGGAGTGCCTTGGCTTGGCTGGCCGGTATGACTGTATTTATAGCTTTGTTATCGGAATATGTGGTGGAGACAATTGAGGATGCATCAAAATCTTGGAGCCTCTCAGTCAGCTTCATCAGTATAATCTTGTTACCTATTGTTGGAAATGCAGCCGAACATGCAGGGGCCATCATATTTGCGGTCAAGAACAAATTGGACATCTCACTGGGTGTTGCTCTTGGTTCTGCCACTCAAATATCGATGTTTGTGATTCCTCTCTGTGTGATTGTTGCTTGGATCATGGGCATTAAGATGGATCTTGACTTCAATCTTCTAGAGACCGGCAGTCTTACTTTGTCAATAATTGTCACAGCCTTAGCCTTACAGGATGGCACTTCTCACTACATGAAAGGCCTTATTCTAATGCTGTGCTACATTGTCATTGGTGCTTGCTTCTTCTTAGTGAGAACACCATTCAGTAAGTAA 1284 0.4439 MGSHQEPWLLENGNVKGLSREMRHGRTAHNMSATSLRKKSDLTLVSKVRFGLLRNVLANLQEVILGTKLSVLFPAIPLAIVAQCLGFARPWIFALSLLGLTPLAERVSFLTEQISFYTGPTVGGLINATCGNITELIIAIFALTQNKVDVVKYSLLGSVLSNLLLVLGTSLLCGGLSNLRTEQKYDRRQADVNSLMLMLALLCLLLPMLYRYAGASVAAKPVLQLSRVTSIVMLIAYFCFLMFQLFTHRELFEAQEEGEDDDDAAEETAVLGVWSALAWLAGMTVFIALLSEYVVETIEDASKSWSLSVSFISIILLPIVGNAAEHAGAIIFAVKNKLDISLGVALGSATQISMFVIPLCVIVAWIMGIKMDLDFNLLETGSLTLSIIVTALALQDGTSHYMKGLILMLCYIVIGACFFLVRTPFSK* 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte1g00055 427 FunFam Vacuolar cation/proton exchanger 120 262 - -
Pte1g00055 427 Gene3D - 120 257 IPR044880 -
Pte1g00055 427 Gene3D - 264 419 IPR044880 -
Pte1g00055 427 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 22 422 IPR004713 GO:0006812|GO:0008324|GO:0016020
Pte1g00055 427 NCBIfam calcium/proton exchanger 55 419 - -
Pte1g00055 427 FunFam Vacuolar cation/proton exchanger 264 420 - -
Pte1g00055 427 Pfam Sodium/calcium exchanger protein 91 245 IPR004837 GO:0016020|GO:0055085
Pte1g00055 427 Pfam Sodium/calcium exchanger protein 277 414 IPR004837 GO:0016020|GO:0055085
Pte1g00055 427 NCBIfam calcium/proton exchanger 74 419 IPR004798 GO:0006816|GO:0015369
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte1g00055 Pte-Chr1 673828 676664 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte1g00055 6 427 Antiporters AT2G38170 68.129 0.0 575
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte1g00055 K07300 - gmx:100779440 598.586