Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte1g00047 ATGGCGTCTACTCCTCGCTCAGTGGAAGAGATTTTCAAGGATTTCAGTGCTCGAAGAGCTGGTGTTGTTCGTGCTTTAACTCAAGATGTTGATGAATTTTATGGACTCTGTGATCCGGAAAAGGAGAATTTATGCCTTTATGGACATCCAAATGAAAGCTGGGAAGTGAATCTTCCAGCAGAAGAAGTTCCACCTGAACTTCCTGAGCCAGCTTTAGGAATCAACTTTGCTAGGGACGGGATGGACCGAAGGGACTGGCTTTCCTTGGTCGCTGTGCACAGTGATTGTTGGCTACTTTCTGTGGCTTTCTATCTTGGAGCCAGGCTTAACAGAAATGAAAGAAAACGCCTGTTCAGCATGATCAATGATCTTCCTACGGTCTTTGAAGTTTTGACAGAGAGGAAACTGGTAAAAGACAAGCCCGTTGTTGATAGTGGAAGCAAATCTCGAGGCAGCACTAAGAGGTCCAGTGATGGACAAGTTAAAAGCAATCCCCAACTTGCAGAAGAAAGTTTTGAAGAGGATGATGATGAACACAATGAAACCTTCTGTGGGAGCTGTGGTGGAAGCTACAGCGCAGATGAATTTTGGATTGGTTGTGACATCTGTGAGAAATGGTTCCATGGGAAATGTGTGAAGATTACCCCTGCCAAGGCTGAAAGCATCAAGCAATACAAATGCCCCTCGTGTAGCTTCAAACGGGCCAGGCCTTAA 714 0.4538 MASTPRSVEEIFKDFSARRAGVVRALTQDVDEFYGLCDPEKENLCLYGHPNESWEVNLPAEEVPPELPEPALGINFARDGMDRRDWLSLVAVHSDCWLLSVAFYLGARLNRNERKRLFSMINDLPTVFEVLTERKLVKDKPVVDSGSKSRGSTKRSSDGQVKSNPQLAEESFEEDDDEHNETFCGSCGGSYSADEFWIGCDICEKWFHGKCVKITPAKAESIKQYKCPSCSFKRARP* 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte1g00047 237 SUPERFAMILY FYVE/PHD zinc finger 172 234 IPR011011 -
Pte1g00047 237 CDD PHD_AL_plant 183 233 IPR044104 -
Pte1g00047 237 Pfam PHD-finger 183 232 IPR019787 -
Pte1g00047 237 SMART PHD_3 183 231 IPR001965 -
Pte1g00047 237 MobiDBLite consensus disorder prediction 142 179 - -
Pte1g00047 237 MobiDBLite consensus disorder prediction 146 167 - -
Pte1g00047 237 ProSitePatterns Zinc finger PHD-type signature. 184 230 IPR019786 -
Pte1g00047 237 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 174 231 IPR013083 -
Pte1g00047 237 Pfam Alfin 7 132 IPR021998 GO:0006355|GO:0042393
Pte1g00047 237 PANTHER CPG BINDING PROTEIN 4 236 IPR045104 GO:0006355|GO:0042393
Pte1g00047 237 FunFam PHD finger alfin-like protein 176 232 - -
Pte1g00047 237 ProSiteProfiles Zinc finger PHD-type profile. 181 233 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte1g00047 Pte-Chr1 610965 613923 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte1g00047 2 236 Alfin-like Transcription Factor Family AT5G05610 76.695 4.91e-120 340
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Pte1g00047 Alfin 1.8e-68 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte1g00047 K26274 - qsa:O6P43_026231 447.588