Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte1g00046 ATGCCTTCAAAAAGCTCAGATCTCTCAAGCAAAGAACGCCTTCGTTGGACCCATGAGTTACATGAGCGGTTTGTTGAGGCTGTCACTAGGCTTGGTGGCCCTGACAGGGCAACACCGAAGGTTATTCTTAAGGTCATGGGGGTTCCTGGTTTGAGTACTTACCACGTCAAAAGTCATTTGCAGAAATACAGGATCTCAAAGTTCGTGCCAGAATCAACAACCAGAGGCAAGTTTGAGAGAAGAAGCATATCAGAGATACTCCCAAATTTTAGGACAACATCTGCCCTTCAGCTCAAGGAAATTCTGCAAATACAAATGGAAGTACAGAAGAGGCTAAGTGAACGAAACAAGGTCCAGAAGAGGTTAAAGCTTAAGGTTGAAGCACAGGCGAGATACCTGGAAAAGATTGGACAAGAAAAGCACAGTTGTGACGCCATGTCTTCCTACTTGCCATTTTCACTTAATGATTCATTTTCCTCAAGCCAGGAAGTTGAATCAGACACAAAAGGAAGTGAATCTGATAGTGAAAGACAGTCTGAGGGAAAGGTGAGAGCTGTCAAAAAAAGGCTGAAGGTTGAAGACAATGAACGAACACCCATTCTTGCTTGCATCATGTAG 618 0.4369 MPSKSSDLSSKERLRWTHELHERFVEAVTRLGGPDRATPKVILKVMGVPGLSTYHVKSHLQKYRISKFVPESTTRGKFERRSISEILPNFRTTSALQLKEILQIQMEVQKRLSERNKVQKRLKLKVEAQARYLEKIGQEKHSCDAMSSYLPFSLNDSFSSSQEVESDTKGSESDSERQSEGKVRAVKKRLKVEDNERTPILACIM* 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte1g00046 205 NCBIfam myb-like DNA-binding domain, SHAQKYF class 11 66 IPR006447 GO:0003677
Pte1g00046 205 MobiDBLite consensus disorder prediction 161 189 - -
Pte1g00046 205 MobiDBLite consensus disorder prediction 167 189 - -
Pte1g00046 205 Gene3D - 10 69 - -
Pte1g00046 205 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 10 164 IPR044848 GO:0003700
Pte1g00046 205 FunFam Myb family transcription factor 10 68 - -
Pte1g00046 205 Pfam MYB-CC type transfactor, LHEQLE motif 97 140 IPR025756 -
Pte1g00046 205 Pfam Myb-like DNA-binding domain 14 64 IPR001005 -
Pte1g00046 205 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 8 68 IPR017930 -
Pte1g00046 205 SUPERFAMILY Homeodomain-like 10 65 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte1g00046 Pte-Chr1 607899 609312 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte1g00046 2 194 G2-like Transcription Factor Family AT3G13040 41.414 1.84e-39 138
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Pte1g00046 Myb_DNA-binding 4.6e-09 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte1g00046 - - pvy:116115132 217.624