Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte1g00037 ATGCCTGCTGAAATCGAAAACTACGTCCACAGGATTGGTCGTACTGGGAGGTGTGGCAAGACAGGCATAGCGACAACATTTATAAATAAGAATCAAAGTGAGACAACTTTACTTGATCTCAAGCACCTCTTGCAAGAAGCAAAACAAAGAATTCCTCCTGTCTTGGCTGAGTTAAATGATTCCATGGAGGATATTGAAGCTACTGCTAATGCCAGTGGGGTCAAAGGCTGTGCATATTGTGGCGGTCTTGGTCATCGGATCCGGGATTGTCCTAAATTGGAACAACAGAAGAGCCAGGCAATCGCTAATACAAGGAGGGATTACTTTGGTTCCAGTGGATACCGTGGAGAATCTAAATCTGCTAATCCTTTCTGTTGTTCCCTTTACATTAGATGTAGATGGTGTTGCAACTTTTGA 417 0.4341 MPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLAELNDSMEDIEATANASGVKGCAYCGGLGHRIRDCPKLEQQKSQAIANTRRDYFGSSGYRGESKSANPFCCSLYIRCRWCCNF* 139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte1g00037 138 Gene3D - 1 61 IPR027417 -
Pte1g00037 138 ProSiteProfiles Zinc finger CCHC-type profile. 77 92 IPR001878 GO:0003676|GO:0008270
Pte1g00037 138 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1 59 IPR001650 -
Pte1g00037 138 Gene3D - 66 104 - -
Pte1g00037 138 SMART c2hcfinal6 76 92 IPR001878 GO:0003676|GO:0008270
Pte1g00037 138 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 1 59 - -
Pte1g00037 138 Coils Coil 30 50 - -
Pte1g00037 138 SUPERFAMILY Retrovirus zinc finger-like domains 76 100 IPR036875 GO:0003676|GO:0008270
Pte1g00037 138 Pfam Zinc knuckle 76 92 IPR001878 GO:0003676|GO:0008270
Pte1g00037 138 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1 36 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte1g00037 Pte-Chr1 557709 558927 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte1g00037 1 58 Eukaryotic Initiation Factors Gene Family AT1G72730 34.483 8.36e-08 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte1g00037 K13116 - aew:130762065 228.409