Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte1g00028 ATGAATTGGGGACGTGAAGTTCTATCTCCTTCGTATCTTCAAAACTCAAGTTGGTTGTTTCAGGAAAGCAAGGGAACCAAATGGACCCTAAGAGAGAATAAGTTATTTGAGAATGCTCTGGCTGTTTTTGATAAAGATACCCCTGATCGTTGGCTGAGGGTGGCAGCTATGATTCCAGGAAAGACTGTAGGTGATGTGATGAGACAATACAAGGAGTTAGAAGAAGATGTCAGTGACATTGAAGCTGGGCTCACACCTATTCCTGGTTATGCTAGTAGCTCTTTCACGTTGGAGTGGTTCAACAATCAAGGCTTTGATGGGCAAAAGCAATTATACGGTGGTGGTGGCAAAAGGGGTTCTTCCACAAGGCCTTCTGAGCAAGAAAGGAAAAAGGGAGTGCCATGGACAGAAGAGGAGCACAGGCAATTCTTGATGGGGCTTAAAAAGTATGGCAAAGGTGACTGGAGAAATATCTCTCGGAATTTTGTGTCTACGAGGACCCCTACTCAGGTCGCTAGTCATGCGCAGAAATATTTCATCCGGCAGCTTATAAGAGGAAAGGATAAGCGAAGATCAAGCATCCATGATATCACAACAGTCAACCTCCCAGACACCAAGTCTCCTTCACCCGACTCTCAGAAGCTGACATCTCAAGATCATTCTCCGAAGATTTTGCATACACAACAAAATCCGAAGGTTTCTGCCAATTGGCAATTACCGTGTGAGGAAGCAGCTATGCCTTATAATCCAACGAATGGAAATATGTTTATTGCACCATTTTACGGGGTCTCCTCAAATGAATCTAAGCTGCAAGATCAATATTTTTTTGGGGGCACTATTCATGGATCTCAGTGTGGAGCTTATGATACCAGCTTCCAAATGCCATCTGTTTAA 894 0.4374 MNWGREVLSPSYLQNSSWLFQESKGTKWTLRENKLFENALAVFDKDTPDRWLRVAAMIPGKTVGDVMRQYKELEEDVSDIEAGLTPIPGYASSSFTLEWFNNQGFDGQKQLYGGGGKRGSSTRPSEQERKKGVPWTEEEHRQFLMGLKKYGKGDWRNISRNFVSTRTPTQVASHAQKYFIRQLIRGKDKRRSSIHDITTVNLPDTKSPSPDSQKLTSQDHSPKILHTQQNPKVSANWQLPCEEAAMPYNPTNGNMFIAPFYGVSSNESKLQDQYFFGGTIHGSQCGAYDTSFQMPSV* 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte1g00028 297 SUPERFAMILY Homeodomain-like 26 80 IPR009057 -
Pte1g00028 297 MobiDBLite consensus disorder prediction 122 136 - -
Pte1g00028 297 FunFam Transcription factor SRM1 20 87 - -
Pte1g00028 297 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 127 183 IPR017930 -
Pte1g00028 297 Pfam Myb-like DNA-binding domain 134 179 IPR001005 -
Pte1g00028 297 NCBIfam myb-like DNA-binding domain, SHAQKYF class 130 182 IPR006447 GO:0003677
Pte1g00028 297 SMART sant 24 76 IPR001005 -
Pte1g00028 297 SMART sant 131 181 IPR001005 -
Pte1g00028 297 CDD SANT 134 179 IPR001005 -
Pte1g00028 297 ProSiteProfiles Myb-like domain profile. 127 179 IPR001005 -
Pte1g00028 297 MobiDBLite consensus disorder prediction 110 136 - -
Pte1g00028 297 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 22 243 IPR043363 -
Pte1g00028 297 Gene3D - 20 87 - -
Pte1g00028 297 MobiDBLite consensus disorder prediction 196 232 - -
Pte1g00028 297 Gene3D - 133 184 - -
Pte1g00028 297 MobiDBLite consensus disorder prediction 190 232 - -
Pte1g00028 297 ProSiteProfiles SANT domain profile. 135 183 IPR017884 -
Pte1g00028 297 CDD SANT 27 73 IPR001005 -
Pte1g00028 297 FunFam transcription factor MYB1R1 133 184 - -
Pte1g00028 297 SUPERFAMILY Homeodomain-like 128 182 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte1g00028 Pte-Chr1 452193 454964 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Pte1g00028 Myb_DNA-binding 2.2e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte1g00028 - - qsa:O6P43_026398 457.218