LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pte1g00022	ATGAATAGAAAGATACTGTATTTCTTCGTGGCTGATATATATACTACTTCGTTATTCATTCTACAGCGTCAGCAACCAGCAACGAAACAAGAAACATGGAAATTCAGTGAACAGATAAAGCAAGCAGAACTTGGTGAACAAATTCTAGAAACCAAATCACACAATCTACCATATGAAACCTCCTGCGCGCAATCTAACATGGAAAACAATCCAGCTACTCAGTCTGGTTTTGGCTTTAATCAATCCGCTCATTCAATCAGAGAGCGAAAAATGTCAGAAGATGGCTTCAAATGGAAAAAATATGGTCAGAAACAAGTTAAAGGAAGCGAAAATCCCCGAAGCTATTACAAATGCACATATCCAGGTTGTGCAATGAAAAAGAAAGTGGAGACTTCTTTAGAGGGGCATGTAACTGAAATTGTCTACAAGGGAAGCCACAATCACCCAAAGCCTCAGCCAAACAGACGCACAAGTTTTCACCCTTCATCATCATGTACCAGCTCTGGTGTTTCCGACCAATCAGTTGTGACTCTAGGGAACATTAAAATGGAAGTCACGTTGCAAGAAGATTCTTCGGTATCACTTGGCGAAGAAGAACAAAAATCACTAACCAGTAATTCAGTAGATTATGATGATGAATTTGAACCTGATGCCAAAAGATGGAAAGTAGAAGATGAAAATGGAGGTTATTCAACTGCAGGAAGTAGTACAGTGAGGGAACCTAGAGTTGTTGTTCAAACTACAAGTGAAATCGATATACTCGACGATGGGTACAGATGGAGGAAATATGGGCAGAAAGTTGTCAAAGGCAATCCAAACCCAAGGAGTTACTACAAGTGCACATTTGCAGGCTGTTCAGTGAGGAAACATGTGGAGCGAGCCGCCAATGATTTGAGGTCTGTGATCACAAGTTATGAAGGGAAACACAACCATGACGTCCCTACTGCACGAGGAACCGGTACTTATGCTACAAACAGAACTTCATTCAATAATAACCTTGGCAACGCAATCGTGCCAATAAGGCCGTCAGCCATGACCAGTTACTCTAGTCAACCAATTTTTATAAATTCTGTCAACCACACAAGGCTACCAAATTCTTCAAGTCAAGAACCAGCTCACTTTGAAATGTTGGAGGATCCTGGGAACATTGGATATTCAAATTTTGGAAGGTTGATCGATTCATACCTAGACCAACACAAAGATTACGGTGGACATTTGCCAAGTTCATGA	1230	0.4081	MNRKILYFFVADIYTTSLFILQRQQPATKQETWKFSEQIKQAELGEQILETKSHNLPYETSCAQSNMENNPATQSGFGFNQSAHSIRERKMSEDGFKWKKYGQKQVKGSENPRSYYKCTYPGCAMKKKVETSLEGHVTEIVYKGSHNHPKPQPNRRTSFHPSSSCTSSGVSDQSVVTLGNIKMEVTLQEDSSVSLGEEEQKSLTSNSVDYDDEFEPDAKRWKVEDENGGYSTAGSSTVREPRVVVQTTSEIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTFAGCSVRKHVERAANDLRSVITSYEGKHNHDVPTARGTGTYATNRTSFNNNLGNAIVPIRPSAMTSYSSQPIFINSVNHTRLPNSSSQEPAHFEMLEDPGNIGYSNFGRLIDSYLDQHKDYGGHLPSS*	410

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Pte1g00022	409	Gene3D	WRKY domain	239	315	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
Pte1g00022	409	Gene3D	WRKY domain	79	152	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
Pte1g00022	409	ProSiteProfiles	WRKY domain profile.	249	314	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
Pte1g00022	409	MobiDBLite	consensus disorder prediction	189	203	-	-
Pte1g00022	409	MobiDBLite	consensus disorder prediction	151	171	-	-
Pte1g00022	409	FunFam	WRKY transcription factor	80	152	-	-
Pte1g00022	409	FunFam	WRKY transcription factor 33	241	307	-	-
Pte1g00022	409	Pfam	WRKY DNA -binding domain	93	149	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
Pte1g00022	409	Pfam	WRKY DNA -binding domain	255	312	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
Pte1g00022	409	ProSiteProfiles	WRKY domain profile.	87	151	IPR003657	GO:0003700\|GO:0006355\|GO:0043565

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Pte1g00022	Pte-Chr1	385352	386834	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pte1g00022	87	386	WRKY Transcription Factor Family	AT2G38470	54.381	2.21e-100	306

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	WRKY	Pte1g00022		WRKY	2.5e-24	CL0274

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pte1g00022	K13424		-	gmx:100792833	434.876

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