Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte1g00007 ATGAAACAGAAAGAGAGTGAGCTGGTGCAGCGCTATGAACTGGGGAGATTGTTAGGCCAGGGAACTTATGCAAAGGTTTACTTTGCAAGGAGTCGTAGGACTGGCCTGAGTGTGGCCATCAAGGTAATCGACAAAGAGAAGGTCTTGAAAGCTGGGATGGCTGATCAAATTAAGCGAGAAATTTCAGTGATGAGGTTGGCTCATCATCCAAATATAGTTGAGCTCTATGAAGTGATGGCTAGCAAAAAAAAAATTTACTTCGTCATGGAGTATGCCAAAGGCGGTGAGCTCTTTGCCAAGGTGGCTAAGGGAAAGATCAAGGAGGACGAGGCAAGGAAGTACTTTCAGCAACTGATCAGTGTTCTTGATTACTGTCATAGTCGAGGTGTGTTTCATCGGGATCTGAAGCCAGAAAATCTTTTACTAGATGAAAATGAGAACTTAAAGGTTACAGATTTTGGATTGAGTGCCCTTGCAGAATGTAAGCGCCATGACGGCTTGCTGCATACTATTTGTGGTACACCTGCTTATGTTGCTCCTGACGTGCTCAGCAGAAAGGGTTATGATGGGTCCAAAGCAGATATTTGGTCATGCGGGGTGATCTTATATGTTCTATTGGCTGGATATCTACCATTCCGTGATTCGAACTTGATAGAGTTATATAAGAAGATTAGCAAAGGGGAATTCAAATTTCCTAACTGGTTTGCACCTGACATTCAGAGTTTGTTATCCAAGATCTTGGATCCCGACCCAAGCAGACGAATAACAATATCTGGAATCATGGAAAGTTCATGGTTCCAAAAGGGATTAAGCACAAATTGTGTCTACACTGAGATCAAAGAAGAGCCTGCCCCACTGGATTTTGGTGGAGTTTCAGGACTCCTTAAAAATGGCAGTCCTACCATCGAGTTAGACCAAGAAGTGACAAAACCTTGCAATCTTAATGCTTTCAATATAATATCATACTCAGCAGGTCTTGACCTGTCTGGCTTGTTTGAAGAAACTCACCAAAAGAAAGAATTGCGGTTTACATCCAACAAACCTGCTTCAATTATCATCTCTAAGCTGGAAGACATTGCCAAGCACCTTGGTTTGAAACTCCAGAAGAAAGAGAGAGGCTTGTTGAAATTGGAAGGTTCACTGGAAGGTAGGAAAGGGGTTTTGGCTATTGATGCTGAAATCTTTGAGATTATCCCTTTTTTCCATGTTGTAGAGATTAGAAATTCCAATGGCGATATGTTGGAGTATCAGAATATCATGAAACAGGAACTAAGACCAGCACTGAAGGACATTATTTGGAGTTGGCAAGGGGAACAGCCTCAGCAACTCCAGGAGCAACTGAATCAGCAGGACCTACAGCTTTAA 1365 0.4242 MKQKESELVQRYELGRLLGQGTYAKVYFARSRRTGLSVAIKVIDKEKVLKAGMADQIKREISVMRLAHHPNIVELYEVMASKKKIYFVMEYAKGGELFAKVAKGKIKEDEARKYFQQLISVLDYCHSRGVFHRDLKPENLLLDENENLKVTDFGLSALAECKRHDGLLHTICGTPAYVAPDVLSRKGYDGSKADIWSCGVILYVLLAGYLPFRDSNLIELYKKISKGEFKFPNWFAPDIQSLLSKILDPDPSRRITISGIMESSWFQKGLSTNCVYTEIKEEPAPLDFGGVSGLLKNGSPTIELDQEVTKPCNLNAFNIISYSAGLDLSGLFEETHQKKELRFTSNKPASIIISKLEDIAKHLGLKLQKKERGLLKLEGSLEGRKGVLAIDAEIFEIIPFFHVVEIRNSNGDMLEYQNIMKQELRPALKDIIWSWQGEQPQQLQEQLNQQDLQL* 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte1g00007 454 Pfam Protein kinase domain 12 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pte1g00007 454 CDD STKc_SnRK3 11 265 - -
Pte1g00007 454 ProSiteProfiles NAF domain profile. 309 333 IPR018451 GO:0007165
Pte1g00007 454 Gene3D Transferase(Phosphotransferase) domain 1 2 287 - -
Pte1g00007 454 Gene3D Kinase associated domain 1, KA1 309 434 - -
Pte1g00007 454 FunFam Non-specific serine/threonine protein kinase 3 91 - -
Pte1g00007 454 CDD CIPK_C 315 429 - -
Pte1g00007 454 ProSitePatterns Protein kinases ATP-binding region signature. 18 41 IPR017441 GO:0005524
Pte1g00007 454 Pfam NAF domain 311 369 IPR004041 GO:0007165
Pte1g00007 454 ProSiteProfiles Protein kinase domain profile. 12 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pte1g00007 454 SMART serkin_6 12 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pte1g00007 454 FunFam Non-specific serine/threonine protein kinase 309 433 - -
Pte1g00007 454 ProSitePatterns Serine/Threonine protein kinases active-site signature. 130 142 IPR008271 GO:0004672|GO:0006468
Pte1g00007 454 SUPERFAMILY Protein kinase-like (PK-like) 9 288 IPR011009 -
Pte1g00007 454 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 6 429 - -
Pte1g00007 454 FunFam Non-specific serine/threonine protein kinase 5 286 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte1g00007 Pte-Chr1 270199 274582 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte1g00007 1 441 CBL-interacting serine-threonine protein kinases AT5G58380 61.013 0.0 581
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Pte1g00007 Pkinase 1.9e-74 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte1g00007 K07198 - qsa:O6P43_016496 641.728