Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte1g00006 ATGGCTATATCTCCTCAATCTTTCCCTCCAAGAAAGCGGAGGCCATCCGCGGCGTCCTTCGTATCTCCCAAGCTCTCCAATTCTAACCTCCTTCGGTCCCTTCTCCTTCTCTCGAAAGAGATTTCCTCTATGAAACCAATCGAGTTCCTTATGCGACGAAACTCGCTGTCGTTCATCAGAAAAACAAAGCTCCTCAGTATTCTGTTCGAAGACCTCGTACGCAATTCAGCAGTTCATTGTGGTAACAAGAACATAAATGCTTTTCATCACTCAGCCATACTCTGTTTTGAAGAGATGTACATAGTTTTGCAACGTATCAAGGCTCTCATGGAAGACTGTTCCAATGGGAGCAAGATGGGGTTGCTGATGCAAAACCAGTCGGTTTCTAGCAGCTTTCACGAACTCAATATTGAATTGTCGACTCTTCTTGACATCTTCCCTGCCATGGAGATTGACCTTCATGACGATGTCAAGGAATGTGTGTGGTTGATCAGGAAGCAGTGTAAGGAGACCAAAACGTTTGTTGATCCGAGGGACGAGAAAATCAGAAAGGATGTGATCGCCATGCTCAATGGAATCGAAAAGGAGATCGTTCCTGATCGTACGAAGCTATTAGAGGTTTTCGACAGGTTAGGGATTCGAGATTCTTCAGGTTGCAGGGAGGAGATTGAGAATTTGGAAGATGAAGTTCAGAATCAAAACGACGAGAGCTCAAAATCAGACCTCGTTGCTCTCATTGGACTGGTTCGTTACACCAAGTGCGTGTTATTTGGAGCCTCAACGCCAGAGTCCACCATTCCAGACGGAGGACGACTGAAGCGACTCTCATCGGATTTGAATATCCCAGTAGATTTCAGATGTCCAGTAACTCTCGAGTTGATGCGGGACCCGGTTGTCGTGGCAACTGGTCAGACGTACGATCGGGAATCAATCAAATTATGGATGGATTCCGGGCACAATACGTGTCCCAAAACAGGTCAGACCCTGGCCCACACGCAACTCATTCCTAACCGCGCTTTGAGCAATCTTATTGCTTTGTGGTGCCGTGAGCAGAAGATAACTTTTGAAACCGCGGGAAGTAACGATAAAGTCAACAGCGTTAAAACTAGTAAGGTGGCGCTGGAAGCTACTAGGATGACGGTATCTTTCTTGGTCAACAAACTATCTAGTGCTCCATCCATTGATACAGCAAACGCGATCATCTATGAGCTTCGCGTGCTCGCAAAGACAGATTCCGGTAGCAGAGCTTGCATCGCTGAAGCCGGAGCCATCCCACTTCTTATTCGGTATCTCCATGCTCAAAATTCGAACCTTCAAGTCAATGCTGTTACAACCCTGTTAAATCTTTCCATCCTTGAAGTAAACAAGACCAAAATAGTGGAAACAGATGGAGCTCTTAACGGCGTTATAGAAGTGCTGAGGTTGGGAGCCACGTGGGAGTCAAAGGCCAATGCGGCTGCTACAATCTATAGCTTAAGTGCCGTACACGCCTATAGGAAGAAACTGGGGAGGAAGACACGTGTTTTGAAGGGATTGGTTGATTTGGTAAGAGATGGGCCAACATCTTGCAAAAGAGATGCGATGGTGGCTATTTTGAATCTGGCGGGAGATAGAGAGGCGGTGGCGAAGTTAGTTGAAGATGGGGTAGTAGAGACGCTGGTTGAAGTGATGGATGAGTTATCGGAAGAGGCGGTGGCAATACTCGAGGTAGTGGTGAAGCGGGGTGGTTTCGTGGCGGTTGCTTCTGCCTATAGAGCAGTAAAAAAGTTGAGTGTGGCATTGAGGGAAGGGTCAGAAAGAGGTAGGGAGTGCGTAGCAGCTACCTTAGTGACTATATGTAGGAAAGGGGGATCGGAGATGGTGGCGGAGCTGGCGTCGATGCCGGGAATGGAGAGGGTTCTATGGGAATTGATGGCAACTGGAACAGTGAGGTCAAGAAGGAAAGCATCTACACTGCTGAGGATTCTAAGGAGATGGACAGCAGGTTTGAACGTTGAATTGGAAGAAGGGTTGTCAAGAGCTAGGGTACATTCTTCAACAGCCATTTTGGTTGAGTAA 2058 0.4728 MAISPQSFPPRKRRPSAASFVSPKLSNSNLLRSLLLLSKEISSMKPIEFLMRRNSLSFIRKTKLLSILFEDLVRNSAVHCGNKNINAFHHSAILCFEEMYIVLQRIKALMEDCSNGSKMGLLMQNQSVSSSFHELNIELSTLLDIFPAMEIDLHDDVKECVWLIRKQCKETKTFVDPRDEKIRKDVIAMLNGIEKEIVPDRTKLLEVFDRLGIRDSSGCREEIENLEDEVQNQNDESSKSDLVALIGLVRYTKCVLFGASTPESTIPDGGRLKRLSSDLNIPVDFRCPVTLELMRDPVVVATGQTYDRESIKLWMDSGHNTCPKTGQTLAHTQLIPNRALSNLIALWCREQKITFETAGSNDKVNSVKTSKVALEATRMTVSFLVNKLSSAPSIDTANAIIYELRVLAKTDSGSRACIAEAGAIPLLIRYLHAQNSNLQVNAVTTLLNLSILEVNKTKIVETDGALNGVIEVLRLGATWESKANAAATIYSLSAVHAYRKKLGRKTRVLKGLVDLVRDGPTSCKRDAMVAILNLAGDREAVAKLVEDGVVETLVEVMDELSEEAVAILEVVVKRGGFVAVASAYRAVKKLSVALREGSERGRECVAATLVTICRKGGSEMVAELASMPGMERVLWELMATGTVRSRRKASTLLRILRRWTAGLNVELEEGLSRARVHSSTAILVE* 686
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte1g00006 685 SUPERFAMILY ARM repeat 380 656 IPR016024 -
Pte1g00006 685 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 422 464 IPR000225 GO:0005515
Pte1g00006 685 SMART arm_5 411 451 IPR000225 GO:0005515
Pte1g00006 685 SMART arm_5 537 573 IPR000225 GO:0005515
Pte1g00006 685 Pfam U-box domain 281 352 IPR003613 GO:0004842|GO:0016567
Pte1g00006 685 Gene3D - 361 673 IPR011989 -
Pte1g00006 685 Pfam Armadillo/beta-catenin-like repeat 412 450 IPR000225 GO:0005515
Pte1g00006 685 PANTHER U BOX DOMAIN-CONTAINING 57 657 - -
Pte1g00006 685 ProSiteProfiles U-box domain profile. 280 354 IPR003613 GO:0004842|GO:0016567
Pte1g00006 685 SUPERFAMILY RING/U-box 279 354 - -
Pte1g00006 685 CDD RING-Ubox_PUB 282 334 IPR045210 -
Pte1g00006 685 SMART Ubox_2 284 347 IPR003613 GO:0004842|GO:0016567
Pte1g00006 685 Coils Coil 216 243 - -
Pte1g00006 685 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 271 360 IPR013083 -
Pte1g00006 685 FunFam RING-type E3 ubiquitin transferase 281 352 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte1g00006 Pte-Chr1 265405 269065 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte1g00006 9 662 U-box Gene Family AT5G01830 57.622 0.0 736
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte1g00006 - - qsa:O6P43_026334 906.746