Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte1g00003 ATGGCGTCAAGGACTTGTATGAATTTATCATGTGGAACATCAACCACGACACAGTGGCACAGAGGCTGGGCCTTACGATCTGGTCACGCTGATCTCTGTGATAACTGCGCTTCGGTCTATGACCAATCTACTTTCTGTGATGTGTTCCATTGTAATGATTCTGGTTGGAGAGAGTGCAATTCATGCGGCAAGAGGCTCCATTGTGGATGCATTGCTTCAGTCTCACTCATTGATTTGCTTGATACTGGTGGAATAAACTGCATAAACTGTTCTAAAAATTCTGGGCTGCAACCTATTGTTAGAAATGACAAACCTGATGGATTTAGTACATTCAAAGTGGAGAACACCGGCAGACTGCAATGCCCTTCTTTGGATGATCAATTTATAGAATTGAAGGATATGAAATTAGGAACTAGTATGGAATATAATGGGTTTCAACATGTTCTCCACCATCCTATTAATGAGACAAATGGATCTGTTACGAAAATGAAACGGGAAGAAATTCTCCCACCAGCAAGAGAATTTGGAAGCACTTCATTATCAATTTTTAGCAGTGTATCTTCAGGATTGTACAATGGTTCAAAAGAAGATATCGAGCAGAATATGGGGACAAGAAATATGCATGACTCGCTTGTCCAAACAAATTTGGCTATGACTTTGGGTACACCTTTCAAAAACTCCACCAATGGTGCACATGTTGATGAATCAGAGCAAAATAGAGCATCTCCAATTTTAGGACCAAGGTCTCGCCATCTGTTACCCAAGCCCCCTAGGTCTACTCTTCTTACAAGCTTGGACACAAATGCTGAAATGGTTTCACAGATGCGAGTGGCAAGGCCACCTGCTGAAGGACGAGGAAGGAATCAGTTACTTCCTCGATATTGGCCTAGGATTACAGACCAAGAATTACAGCAACTATCTGGAGATTCAAATTCCACCATCATTCCACTTTTTGAAAAGATGCTGAGTGCCAGTGATGCTGGTCGAATTGGTCGTCTTGTTCTTCCAAAAGCATGTGCTGAAGCTTATTTTCCACCTATATCTCAGCCAGAGGGTCTTCCGTTAAGAATTCAAGATGTGAAGGGTAAAGAATGGGTTTTCCAGTTCAGGTTTTGGCCAAACAACAACAGCAGAATGTATGTTTTGGAAGGCGTAACAGCTTGTATTCAGTCTATGCAGTTGCAAGCCGGAGATACTGTTACATTTAGCCGTATGGACCCTGAGGGAAAACTTATTATGGGATTCCGGAAAGCATCAAATTCTGCTGCGCTGCAGTCTCTGAAAGGAAGTGGAGATCCTGACTTGAATATGCTGTCCAGACATTGGAGTTCAGCCACTATAAATATTGATTGGCATAATGTTGAGAAAAGTGAAGACAGACCAAGGGAGGGTTTGATGCTGCCACCGGGTCTAGCTCCAGAAAAGAAGAGGGCTCGGAATATTGGATCAAAGAGTAAGAGGTTGCACATTGACTGCCATGATGCACTGGAACTGAAACTTACCTGGGAAGAGGTTCAGGAATTGCTTCGTCCACCCTTGATGGCTAATCCCAGCACTGTAATAATTGAGGATCATCTATTTGAAGAGTATGAGGAACCACCAATTTTCGGGAAGAAAAGTATATTCGTGGTTCGCTCTAATGGTGTACAAGAACAATGGGCTCAATGTGATACTTGCTCAAAATGGCGAAGGCTGCCTATTGATATACTTCTTCCGCCAAAGTGGAATTGTGCAGACAATTCCTCGGACACTTGCAGGTGTTCCTGTTCTGCCCCTGATGAATTGACCTCAAGAGAATTGGATAATCTTCTGAGACTGAATAAGGAATTTAGAAAATGGAAGATGGCAGCATGTCATGGGTCTACCATGGAGTGTGAATCTTCTGGTATTGAGGCATTGGCTGGTGCTGCAATCTTGGGAGAAAATGTGGGTGACTCTGGGACATCATCAGTTGCAACGACGACCAAACACCCCCGACACCGTCCTGGCTGCTCCTGCATTGTTTGCATCCAGCCACCCAGTGGAAAGGGCAAGCATAAGCCTACATGCACCTGCAATGTATGCATGACAGTCAAACGCCGGTTCAAAACCCTGATGATGCGGAAGAAAAAGCGTCAGTCTGAGCGTGAAGCTGAGATAGGTGAGAAGAGCCAGTTTTCATGTTGTCCTAGGGATGAGACAGAAGCAGAAAGCGCGGCGAGGCATGTGGTGCCTCTGCTACAAAATCCGGAGGATCAAACAAGGACGGTGAACGATATACTTCTTAGAAGCCAATCTAATTTGACTGGAACTAGTAAAGGACAACTAGACTTAAATTGCCATCCTCATCGAGAAGAAAAGAAGCAAGTGGCAAACTCTGTGAGTATGATGTGTCTTCTTCAAGAAGCTAGCCTTCCTCTGGACACATATCTCAAGGAAAATGGTCTTACCAGCTTGATGTCTGAACAGGAAGCAGAGTCAGCTTCCGATTTGCTGTTGCCAGCCACTAACAGAAGTGATGTACAACAAAATGAGAACCCCTGCCCTACTTCGTTTGCTCAAGATGTAGAAAGTGGTGAAGAAAGTGAAGAAAACAATGAGCCAGGCAAAAGCGAAAATGATCCTGTATGA 2610 0.4395 MASRTCMNLSCGTSTTTQWHRGWALRSGHADLCDNCASVYDQSTFCDVFHCNDSGWRECNSCGKRLHCGCIASVSLIDLLDTGGINCINCSKNSGLQPIVRNDKPDGFSTFKVENTGRLQCPSLDDQFIELKDMKLGTSMEYNGFQHVLHHPINETNGSVTKMKREEILPPAREFGSTSLSIFSSVSSGLYNGSKEDIEQNMGTRNMHDSLVQTNLAMTLGTPFKNSTNGAHVDESEQNRASPILGPRSRHLLPKPPRSTLLTSLDTNAEMVSQMRVARPPAEGRGRNQLLPRYWPRITDQELQQLSGDSNSTIIPLFEKMLSASDAGRIGRLVLPKACAEAYFPPISQPEGLPLRIQDVKGKEWVFQFRFWPNNNSRMYVLEGVTACIQSMQLQAGDTVTFSRMDPEGKLIMGFRKASNSAALQSLKGSGDPDLNMLSRHWSSATINIDWHNVEKSEDRPREGLMLPPGLAPEKKRARNIGSKSKRLHIDCHDALELKLTWEEVQELLRPPLMANPSTVIIEDHLFEEYEEPPIFGKKSIFVVRSNGVQEQWAQCDTCSKWRRLPIDILLPPKWNCADNSSDTCRCSCSAPDELTSRELDNLLRLNKEFRKWKMAACHGSTMECESSGIEALAGAAILGENVGDSGTSSVATTTKHPRHRPGCSCIVCIQPPSGKGKHKPTCTCNVCMTVKRRFKTLMMRKKKRQSEREAEIGEKSQFSCCPRDETEAESAARHVVPLLQNPEDQTRTVNDILLRSQSNLTGTSKGQLDLNCHPHREEKKQVANSVSMMCLLQEASLPLDTYLKENGLTSLMSEQEAESASDLLLPATNRSDVQQNENPCPTSFAQDVESGEESEENNEPGKSENDPV* 870
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte1g00003 869 ProSiteProfiles Zinc finger CW-type profile. 547 597 IPR011124 GO:0008270
Pte1g00003 869 FunFam B3 domain-containing transcription repressor VAL1 296 423 - -
Pte1g00003 869 Gene3D - 546 601 - -
Pte1g00003 869 Gene3D - 296 423 IPR015300 -
Pte1g00003 869 Pfam CW-type Zinc Finger 552 594 IPR011124 GO:0008270
Pte1g00003 869 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS07G0563300 3 818 - -
Pte1g00003 869 ProSiteProfiles B3 DNA-binding domain profile. 318 419 IPR003340 GO:0003677
Pte1g00003 869 SUPERFAMILY DNA-binding pseudobarrel domain 315 417 IPR015300 -
Pte1g00003 869 MobiDBLite consensus disorder prediction 460 479 - -
Pte1g00003 869 MobiDBLite consensus disorder prediction 814 869 - -
Pte1g00003 869 CDD B3_DNA 316 417 IPR003340 GO:0003677
Pte1g00003 869 Pfam B3 DNA binding domain 318 417 IPR003340 GO:0003677
Pte1g00003 869 MobiDBLite consensus disorder prediction 229 259 - -
Pte1g00003 869 MobiDBLite consensus disorder prediction 814 849 - -
Pte1g00003 869 SMART B3_2 318 419 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte1g00003 Pte-Chr1 214524 221205 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte1g00003 4 848 B3 DNA Binding Superfamily AT4G32010 49.648 0.0 787
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Pte1g00003 B3 1.2e-15 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte1g00003 K09287 - qsa:O6P43_016468 1165.21