Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte19g01229 ATGGTTGTTCAGATAAAAATGGAAACTGAGGAGCAGCAGAATCTAGATTCTCCTTCAACTGAAAATTTACATCTTGGAATTTCCAACCAAAATCTTCAACATGCAACGCACTCGCTAGCTGCGGCACCACCTGCATACCCATATCCAGACCCATACTATAGAAGTATATTTGCTCCGTATGATGCACAAGCACAACCATTTACACCGCTGCCTTATGGTGGACAGCCCATGGTTCAACTTCAGCTCATGGGAATCCAGCAAGCTGGTGTACCTTTGCCTTCAGATGTGGTTGAGGAGCCTGTGTTTGTGAATGCAAAACAGTACCATGGTATATTGAGACGCAGGCAATCTCGTGCCAAAGCTGAATCAGAAAATAAAGCTGTCAAGTCCCGAAAGCCATACTTGCATGAATCTCGACATTTACATGCAGTGAGAAGAGCCAGAGGATGTGGAGGTCGGTTTCTAAAGAAAACGGAGAACCAACATATGGAGGCGCTTTCAGCTGACAAATCTAAGGCTAATATCAATCTCAACTCAGATAAAAGTGATCAGGACACATCAGATAGGACATCCTAG 576 0.441 MVVQIKMETEEQQNLDSPSTENLHLGISNQNLQHATHSLAAAPPAYPYPDPYYRSIFAPYDAQAQPFTPLPYGGQPMVQLQLMGIQQAGVPLPSDVVEEPVFVNAKQYHGILRRRQSRAKAESENKAVKSRKPYLHESRHLHAVRRARGCGGRFLKKTENQHMEALSADKSKANINLNSDKSDQDTSDRTS* 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte19g01229 191 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 99 154 IPR001289 GO:0003700|GO:0006355
Pte19g01229 191 PRINTS CCAAT-binding transcription factor subunit B signature 131 154 IPR001289 GO:0003700|GO:0006355
Pte19g01229 191 PRINTS CCAAT-binding transcription factor subunit B signature 100 122 IPR001289 GO:0003700|GO:0006355
Pte19g01229 191 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 10 189 IPR001289 GO:0003700|GO:0006355
Pte19g01229 191 MobiDBLite consensus disorder prediction 167 191 - -
Pte19g01229 191 MobiDBLite consensus disorder prediction 7 24 - -
Pte19g01229 191 SMART cbf3 96 157 IPR001289 GO:0003700|GO:0006355
Pte19g01229 191 ProSitePatterns NF-YA/HAP2 subunit signature. 102 122 IPR018362 GO:0003677|GO:0016602
Pte19g01229 191 Gene3D - 97 158 - -
Pte19g01229 191 ProSiteProfiles NF-YA/HAP2 family profile. 97 157 IPR001289 GO:0003700|GO:0006355
Pte19g01229 191 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte19g01229 Pte-Chr19 25541479 25544932 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte19g01229 40 192 CCAAT-HAP2 Transcription Factor Family AT1G30500 64.935 2.77e-61 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Pte19g01229 CBFB_NFYA 3.1e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte19g01229 K08064 - jre:108996576 253.832