Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Pte19g01229 | ATGGTTGTTCAGATAAAAATGGAAACTGAGGAGCAGCAGAATCTAGATTCTCCTTCAACTGAAAATTTACATCTTGGAATTTCCAACCAAAATCTTCAACATGCAACGCACTCGCTAGCTGCGGCACCACCTGCATACCCATATCCAGACCCATACTATAGAAGTATATTTGCTCCGTATGATGCACAAGCACAACCATTTACACCGCTGCCTTATGGTGGACAGCCCATGGTTCAACTTCAGCTCATGGGAATCCAGCAAGCTGGTGTACCTTTGCCTTCAGATGTGGTTGAGGAGCCTGTGTTTGTGAATGCAAAACAGTACCATGGTATATTGAGACGCAGGCAATCTCGTGCCAAAGCTGAATCAGAAAATAAAGCTGTCAAGTCCCGAAAGCCATACTTGCATGAATCTCGACATTTACATGCAGTGAGAAGAGCCAGAGGATGTGGAGGTCGGTTTCTAAAGAAAACGGAGAACCAACATATGGAGGCGCTTTCAGCTGACAAATCTAAGGCTAATATCAATCTCAACTCAGATAAAAGTGATCAGGACACATCAGATAGGACATCCTAG | 576 | 0.441 | MVVQIKMETEEQQNLDSPSTENLHLGISNQNLQHATHSLAAAPPAYPYPDPYYRSIFAPYDAQAQPFTPLPYGGQPMVQLQLMGIQQAGVPLPSDVVEEPVFVNAKQYHGILRRRQSRAKAESENKAVKSRKPYLHESRHLHAVRRARGCGGRFLKKTENQHMEALSADKSKANINLNSDKSDQDTSDRTS* | 192 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Pte19g01229 | 191 | Pfam | CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B | 99 | 154 | IPR001289 | GO:0003700|GO:0006355 | |
Pte19g01229 | 191 | PRINTS | CCAAT-binding transcription factor subunit B signature | 131 | 154 | IPR001289 | GO:0003700|GO:0006355 | |
Pte19g01229 | 191 | PRINTS | CCAAT-binding transcription factor subunit B signature | 100 | 122 | IPR001289 | GO:0003700|GO:0006355 | |
Pte19g01229 | 191 | PANTHER | TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED | 10 | 189 | IPR001289 | GO:0003700|GO:0006355 | |
Pte19g01229 | 191 | MobiDBLite | consensus disorder prediction | 167 | 191 | - | - | |
Pte19g01229 | 191 | MobiDBLite | consensus disorder prediction | 7 | 24 | - | - | |
Pte19g01229 | 191 | SMART | cbf3 | 96 | 157 | IPR001289 | GO:0003700|GO:0006355 | |
Pte19g01229 | 191 | ProSitePatterns | NF-YA/HAP2 subunit signature. | 102 | 122 | IPR018362 | GO:0003677|GO:0016602 | |
Pte19g01229 | 191 | Gene3D | - | 97 | 158 | - | - | |
Pte19g01229 | 191 | ProSiteProfiles | NF-YA/HAP2 family profile. | 97 | 157 | IPR001289 | GO:0003700|GO:0006355 | |
Pte19g01229 | 191 | MobiDBLite | consensus disorder prediction | 1 | 24 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Pte19g01229 | Pte-Chr19 | 25541479 | 25544932 | Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Pte19g01229 | 40 | 192 | CCAAT-HAP2 Transcription Factor Family | AT1G30500 | 64.935 | 2.77e-61 | 187 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | NF-YA | Pte19g01229 | CBFB_NFYA | 3.1e-26 | No_clan |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Pte19g01229 | K08064 | - | jre:108996576 | 253.832 |