Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte19g01216 ATGGTTCATCGCTGCTGCAGCAAACAGAAAGTGAAGAGGGGGCTATGGTCTCCCGAAGAAGATGAGAAACTAATCAATTACAAAACAAAACATAGCCATGCTTCTTGGAGTTCTGTTCCTAAATTAGCAGGTTTGCAGAGGTGTGGAAAGAGTTGCAGATTGAGATGGATAAACTATTTGAGACCTGATCTCAAGAGGGGTTCATTTTCTGCACAAGAAGAGAGAACCCTAATCGATGTTCATAGAATTCTAGGAAACAGGTGGTCTCAAATAGCAAAGCATTTGCCGGGAAGAACAGACAATGAGGTCAAGAACTTCTGGAACTCATGCATCAAGAAGAAACTCATGGCTCAAGGCATAGATCCGAACACCCATAATCTCCTTCCTTCTAGTAAAACGGGCAACGATAAGAGAACCGCACTCAAATCTTTGGAGTCTACTGCTTCAGCATTCAATCTACACAGCACGTGTGTAGGTATAGGGGACGCTGCAATGGCATTTAAACCACCTGTTGTCACGACACCCACTTCCATTTCTGCTTCTGAATTTCAGAATCCTAATAATAATGTTGTTTGGTCAGTCCAAGCATTACAAACTCCGGAGAGTCAGCTGGCGTTTGTAGGCCAATCTTCTATTCTTGCCCAAGTCGCTCTCCACTCTCACCCTCTTAGCCAAAAAATCTTTCAAGGGACAGACGATAAATGCTTATGGGATGGTAACTTGGAGCCCATGGCTGAGCTAAACGAAAATGAAAAGTTATTGCCGCCACTGCAGCAGCAGCAGGAGGATAAAGTTCGTCAAATAGTGGAAATGGACAGACCGTCAGATGATATGACTGTTGAGCAAAACATTTCATTTGAGAGTTCTATCTTCGATTTTGATTTATTGGAGTCAGCTCTATTGACTAACGGAATGCATCGAAACCTAACTGCGTCTTCCATAGATCAATTTCCGTGGGATTATTAA 966 0.4286 MVHRCCSKQKVKRGLWSPEEDEKLINYKTKHSHASWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGSFSAQEERTLIDVHRILGNRWSQIAKHLPGRTDNEVKNFWNSCIKKKLMAQGIDPNTHNLLPSSKTGNDKRTALKSLESTASAFNLHSTCVGIGDAAMAFKPPVVTTPTSISASEFQNPNNNVVWSVQALQTPESQLAFVGQSSILAQVALHSHPLSQKIFQGTDDKCLWDGNLEPMAELNENEKLLPPLQQQQEDKVRQIVEMDRPSDDMTVEQNISFESSIFDFDLLESALLTNGMHRNLTASSIDQFPWDY* 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte19g01216 321 CDD SANT 68 108 IPR001005 -
Pte19g01216 321 ProSiteProfiles Myb-like domain profile. 61 111 IPR001005 -
Pte19g01216 321 Pfam Myb-like DNA-binding domain 13 60 IPR001005 -
Pte19g01216 321 Pfam Myb-like DNA-binding domain 66 109 IPR001005 -
Pte19g01216 321 Gene3D - 68 115 - -
Pte19g01216 321 PANTHER MYB DOMAIN PROTEIN 55 3 244 - -
Pte19g01216 321 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 61 115 IPR017930 -
Pte19g01216 321 ProSiteProfiles Myb-like domain profile. 8 60 IPR001005 -
Pte19g01216 321 SMART sant 12 62 IPR001005 -
Pte19g01216 321 SMART sant 65 113 IPR001005 -
Pte19g01216 321 FunFam MYB transcription factor 5 65 - -
Pte19g01216 321 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 8 60 IPR017930 -
Pte19g01216 321 SUPERFAMILY Homeodomain-like 10 107 IPR009057 -
Pte19g01216 321 CDD SANT 16 60 IPR001005 -
Pte19g01216 321 Gene3D - 5 65 - -
Pte19g01216 321 FunFam Myb transcription factor 68 115 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte19g01216 Pte-Chr19 22766465 22767556 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte19g01216 1 236 MYB Transcription Factor Family AT3G12720 51.362 7.65e-83 251
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pte19g01216 Myb_DNA-binding 1e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte19g01216 K09422 - qsu:112012379 311.227