Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte19g01207 ATGGTTACACAAGTCCGAAGAAAGGTTCAAACTTCTAAGAAAACTCAGAAGAGTGCTAATAACATAGAGGGTTCAGTTAGTTCTCTAACACCAGAGATATCTCTTAGATGGTTTCCTGATGAGTCATGCAGGCCTAAAGTTGATGAAGCACCTGTTTTCCATCCTACTATGGAGGAATTTCAAGATGCACTTAGATATATAGATAAGATACGTCCCATAGCGCAACCATATGGCATATGTCGAATTGTTCCTCCACCTTGTTGGACACCACCATGTCTTCTAAAGGAAAAACAGTTGTGGGTGAACTCTAAGTTCTCGACAAGGGTGCAGCCAATCGAATTGCTACAGAAGAGGGAGCCTATGTGGAAAAAGAACATCGATCAAAAGAGAAAGCGAGGAAGGCAGCCGAAGCTTGGAACTTCTAGGAGATCGAATTCAGTTCCAGAAGCTTATGCTTGTTTAGAATCTGAAAAGTTTGGGTTTAGTTCAGGGCCGGACTTCAGTCTCAGTGATTTTGAGATCTACGCTAATCATTTTAAAGAAAGTTATTTTGGAATGAAAGATGCAGAGGGGGATAATGAAGCTAAGAAAAATGAAAATAAAAGGAGATGGGAGCCCTCTGTGGAGGATATTGAAGGTGAGTACTGGCGAATAATCGAGGCAGATAACATGGTGGATGTTGAGGTACTCTATGGTGCTGACCTGGAAACTGGATCATTTGGGAGTGGTTTCCCGAAGAAATCATCCAAGTTGAGTGGTAGCACTTCAGATCCGTATGCAGTGTCTGACTGGAACCTTAACAATTCTCCTCGTCTGCCTGGTTCAGTGCTTTTTTATGAAAAAAGTGATATTTCAGGTGTCCTTGTGCCATGGTTGTATGTTGGCATGTGCTTTTCCTCATTCTGTTGGCATGTGGAGGATCATCACCTATACTCAATTAATTATCTGCACTGGGGTGCTCCAAAAGTATGGTATGGTGTTCCAGGAACCCATGCTTTGGCTTTTGAAGCTGCTATGAAGAAGCATTTATCTGACCTATTTGAGGAAGTACCAGGTTTACTTAATGAACTGGTTACTCAACTATCTCCTTCCATTCTGAAATCAGAAGGGGTTCCTGTCCATCGCGTCGTTCAGTGTGCAGGAGAGATTGTAATTACCTTCCCTAGGGCATACCACTCTGGATTTAATTGTGGCTTCAACTGCGCTGAGGCTGTGAATATAGCACCCTTTGATTGGTTAGAGTATGGCCAAGGAGCAGTTGAACTATACAGTGAGCAACATAGAAAGTCTTCTATATCTCATGACAAATTATTAATAACATCAGCTTACGACGCTATGCAAGCTCTTATGGAGTTAGCGATTGCTGGAAATGAATCTTCAAAAAATTTGATGTTCAAGTCTTTGTGCGGGAAAGGCGGTACTCTTACTAAAGTATTCAAGAGGAGAGTGCAGATGGAAGAATATAGAATGAGTCATCTTCCCACTCATTTGAAGTTGCGCAAAATGGATAGTGATTTTGATATAACTGATGAGAAAGATTGTGTTTGTTGCTTGTATGATTTATACCTATCTGCAGTTGGATGTGATTGCTCCCCAAGCCGATATTCCTGTCTTAGGCACTCAAATTCACTTTGTTCTTGTGGAGTTGATTGTCGTTTTGTGCTGCAACGGTACACCATAAATGAATTGAATACAATGGTTCGAGCTTTGGAAGGAGATCTAGATGCTATTAGTGCATTGAAGGATATATACTAA 1755 0.412 MVTQVRRKVQTSKKTQKSANNIEGSVSSLTPEISLRWFPDESCRPKVDEAPVFHPTMEEFQDALRYIDKIRPIAQPYGICRIVPPPCWTPPCLLKEKQLWVNSKFSTRVQPIELLQKREPMWKKNIDQKRKRGRQPKLGTSRRSNSVPEAYACLESEKFGFSSGPDFSLSDFEIYANHFKESYFGMKDAEGDNEAKKNENKRRWEPSVEDIEGEYWRIIEADNMVDVEVLYGADLETGSFGSGFPKKSSKLSGSTSDPYAVSDWNLNNSPRLPGSVLFYEKSDISGVLVPWLYVGMCFSSFCWHVEDHHLYSINYLHWGAPKVWYGVPGTHALAFEAAMKKHLSDLFEEVPGLLNELVTQLSPSILKSEGVPVHRVVQCAGEIVITFPRAYHSGFNCGFNCAEAVNIAPFDWLEYGQGAVELYSEQHRKSSISHDKLLITSAYDAMQALMELAIAGNESSKNLMFKSLCGKGGTLTKVFKRRVQMEEYRMSHLPTHLKLRKMDSDFDITDEKDCVCCLYDLYLSAVGCDCSPSRYSCLRHSNSLCSCGVDCRFVLQRYTINELNTMVRALEGDLDAISALKDIY* 585
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte19g01207 584 SMART JmjN_1 49 90 IPR003349 -
Pte19g01207 584 PANTHER LYSINE-SPECIFIC DEMETHYLASE 43 577 - -
Pte19g01207 584 ProSiteProfiles JmjC domain profile. 258 424 IPR003347 -
Pte19g01207 584 Pfam JmjC domain, hydroxylase 291 406 IPR003347 -
Pte19g01207 584 MobiDBLite consensus disorder prediction 125 144 - -
Pte19g01207 584 Pfam C5HC2 zinc finger 514 566 IPR004198 -
Pte19g01207 584 MobiDBLite consensus disorder prediction 1 23 - -
Pte19g01207 584 Pfam jmjN domain 51 84 IPR003349 -
Pte19g01207 584 SUPERFAMILY Clavaminate synthase-like 251 446 - -
Pte19g01207 584 ProSiteProfiles JmjN domain profile. 50 91 IPR003349 -
Pte19g01207 584 SMART cupin_9 258 424 IPR003347 -
Pte19g01207 584 Gene3D Cupin 35 408 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte19g01207 Pte-Chr19 21364601 21371570 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte19g01207 32 577 JUMONJI Transcription Factor Family AT1G30810 59.532 0.0 654
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Pte19g01207 JmjC 3.6e-45 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte19g01207 K11446 - zju:107433853 767.689
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte19g01207 19 21364601 21371570 Pte19g01207 19 21364601 21371570 RCT