Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte19g01203 ATGAAGCTTTCTTCAACTGGTTTTGGCTCGCAACCCCAGGAAGGAGAGAAGAAGGTTCTGAATTCCGAACTATGGCACGCCTGTGCTGGTCCCCTTGTTTCTCTTCCTGTCGTTGGAAGCCGTGTTGTCTATTTCCCACAAGGTCACAGTGAACAGGTTGCTGCATCAACCAATAAGGAAGTAGATGCTCATATCCCTAACTACCCAAGTTTGCCTCCTCAACTTGTGTGTCAACTCCACAATCTGAGCATGCATGCGGATATTGAGACAGATGAAGTATATGCACAAATGACCTTGCAACCTTTGAGTCTGCAAGAGCAAAAGGAAGCCTACCTTCCAGCGGAGTTAGGTGCAACCACGAAACAGCCAACAAATTATTTTTGTAAAACTTTGACTGCCAGTGACACAAGTACGCATGGAGGATTCTCTGTTCCTCGTCGGGCAGCTGAAAAAGTGTTTCCTCCATTGGATTTCTCTCAACAACCTCCTGCTCAAGAGTTACTTGCCAAAGATCTGCATGGGAATGAATGGAAATTCAGACACATATTTCGCGGCCAGCCTAAGAGGCACCTACTTACAACAGGATGGAGTGTATTTGTAAGTGCTAAGAGACTTGTTGCTGGTGATTCAGTGTTGTTTATCTGGAATGAACAGAATCAGTTACTCCTAGGAATCCGGCGTGCTAATCGACCACAAACTGTGATGCCGTCGTCTGTGTTATCAAGTGATAGCATGCATTTAGGTCTTTTGGCAGCTGCAGCACATGCTGCTGCAACAAATAGTCGTTTCACCATTTTTTATAACCCAAGGGCTAGCCCATCAGAGTTTGTCATACCTGTAGCAAAGTATGTAAAAGCAGTCTATCACACTCGAGTTTCAGTTGGCATGCGCTTTAGGATGCTGTTTGAGACAGAGGAATCAAGTGTCCGGCGTTACATGGGTACAATAACTGGCATCGGTGATTTGGATCCAGCTCGGTGGCCAAATTCACATTGGCGATCAGTAAAGGTTGGCTGGGATGAATCCACTGCTGGGGAGAGGCAACCTAGGGTCTCATTGTGGGAAATTGAACCATTAACAACATTTCCTATGTATCCTTCTCCATTTCCACATCGATTGAAACGGCCATGGCCTTCAGGGCTGCCTACTTTCCATGGAGTAAAATATGATGATGTGGGATTAAGTTCTCCACTCTTCTGGATCCAAGCTGATCAACCGGTCCAAGGAATTGGGGTCAATCCCTGGATTCATCCAAGGCTTGATGCCACCATGCTTAATTTACAAAATGATATGTACCAAGCCATGGCTTCTGCTGTATTTCAAGACACAAGATCTGTTGATCCTTCCAAACAGGCACCCATTCCTCTTCAGCAGTTTCAGTTGCAAAATCTCCACAGTAGGTCTGGTGCATTGATGCAACCACAGTTGTTACAGCCAAATCCGCATCAGCAAGCAATAGTTCAGACCATTCAAGAGAACTCACGTTCATCTCATACTCATGCACCAAATCCTACAAATCTTCAACAGCAACAAGAGCACTCGTTTACCCTTCAGCAGCAGTCAAAGCCTCAAATTGATCAGCAACTTCCTTGTGCAATCACTAAAATTCCACAATATGCTGTCCCTCCGTCCCAGTCAGCACCATTACAAGCTATCCCCTCATTGTGCCACCAGCAAAGTTTCTCTGATTCAAATCTGAATCCAGTGACAAGTCCCATAGTTTCGTCCTTGCCTGGTATGTTGAATTCATTGCCCCAGGATGAAGCTTCAAACTTGACTAACCTCCCTAGGACCAGCTCCCTCATACCTTCTGCCAGTTGGCCTTCTAAGAGACCTGCACTTGAACCTCCTAATTCAGCAGTGAATTCTCAGAATGTGTTCCCCCAAGTTGAGCAGTACAGGCACCTACAGGGTACATGGACGGAGAATGCTGTTGCATTGCCACCTCTTCCTGGTAGGGAGTGCTCTATAGATCTTCCTGGAAGTACTGATCCCCAAAACCATGTTCTATTTGGAGTCAGTATAGACCCTTCATCTCTACTACTGCAGAATGGATTGTCAGACCTTAAAGGAGCTGGCAAGAATGCAGATTCCAGTGCCATACCCTTCTCATCTAATTTTGTGAATGACATAGGCAGTAAATATTCTCTCAACCAGGATGTGATGTCTAGTATTGGTGAACCAGGTTTACTGCAGTTTCAAGATAATATTAACCAAGGAAACTCACTGACCAAAACCTTTGTGAAGGTCTACAAATCAGGGTCCTTCGGAAGATCATTGGATATCAGCAAATTCAGCAACTACAATGAGTTGCGAAGTGAATTGGCTCGAATGTTTGGCCTAGAAGGCAAATTAGAGGATCCATTAAGATCAGGCTGGCAGCTTGTATTCGTTGACCGGGAGAATGATGTTCTTCTCCTTGGTGATGGTCCCTGGCCGGAGTTTGTCAACAGTGTGTGGTGCATCAAAATACTGTCCCCTCAAGAAGTGCAAGAAATGGGCAACTGCGGACTGGAGCTTTTGAATTCTGTTCCAATTCAGAGGCTCAACAATGGGGGCTGTGAAGATTATACAAACCAACAGGACCCAAGGAATTGTAGTGGTGGGTTGGCATCTTTGGTGTCTCTTGACTACTAA 2637 0.4535 MKLSSTGFGSQPQEGEKKVLNSELWHACAGPLVSLPVVGSRVVYFPQGHSEQVAASTNKEVDAHIPNYPSLPPQLVCQLHNLSMHADIETDEVYAQMTLQPLSLQEQKEAYLPAELGATTKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELLAKDLHGNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEQNQLLLGIRRANRPQTVMPSSVLSSDSMHLGLLAAAAHAAATNSRFTIFYNPRASPSEFVIPVAKYVKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGIGDLDPARWPNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSPFPHRLKRPWPSGLPTFHGVKYDDVGLSSPLFWIQADQPVQGIGVNPWIHPRLDATMLNLQNDMYQAMASAVFQDTRSVDPSKQAPIPLQQFQLQNLHSRSGALMQPQLLQPNPHQQAIVQTIQENSRSSHTHAPNPTNLQQQQEHSFTLQQQSKPQIDQQLPCAITKIPQYAVPPSQSAPLQAIPSLCHQQSFSDSNLNPVTSPIVSSLPGMLNSLPQDEASNLTNLPRTSSLIPSASWPSKRPALEPPNSAVNSQNVFPQVEQYRHLQGTWTENAVALPPLPGRECSIDLPGSTDPQNHVLFGVSIDPSSLLLQNGLSDLKGAGKNADSSAIPFSSNFVNDIGSKYSLNQDVMSSIGEPGLLQFQDNINQGNSLTKTFVKVYKSGSFGRSLDISKFSNYNELRSELARMFGLEGKLEDPLRSGWQLVFVDRENDVLLLGDGPWPEFVNSVWCIKILSPQEVQEMGNCGLELLNSVPIQRLNNGGCEDYTNQQDPRNCSGGLASLVSLDY* 879
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte19g01203 878 Gene3D - 125 228 IPR015300 -
Pte19g01203 878 ProSiteProfiles B3 DNA-binding domain profile. 127 229 IPR003340 GO:0003677
Pte19g01203 878 FunFam Auxin response factor 740 834 - -
Pte19g01203 878 ProSiteProfiles PB1 domain profile. 745 829 IPR000270 GO:0005515
Pte19g01203 878 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 17 834 IPR044835 GO:0003677|GO:0006355|GO:0009725
Pte19g01203 878 Pfam AUX/IAA family 741 830 IPR033389 -
Pte19g01203 878 MobiDBLite consensus disorder prediction 603 622 - -
Pte19g01203 878 Gene3D - 741 834 - -
Pte19g01203 878 Pfam Auxin response factor 253 336 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Pte19g01203 878 FunFam Auxin response factor 125 229 - -
Pte19g01203 878 SUPERFAMILY DNA-binding pseudobarrel domain 112 256 IPR015300 -
Pte19g01203 878 SMART B3_2 127 229 IPR003340 GO:0003677
Pte19g01203 878 Gene3D - 291 363 - -
Pte19g01203 878 SUPERFAMILY CAD & PB1 domains 745 820 - -
Pte19g01203 878 CDD B3_DNA 126 227 IPR003340 GO:0003677
Pte19g01203 878 MobiDBLite consensus disorder prediction 490 514 - -
Pte19g01203 878 FunFam Auxin response factor 291 363 - -
Pte19g01203 878 Pfam B3 DNA binding domain 127 228 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte19g01203 Pte-Chr19 20612097 20618569 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte19g01203 13 849 B3 DNA Binding Superfamily AT1G19850 42.601 0.0 578
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Pte19g01203 AUX_IAA 5.1e-07 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte19g01203 - - tcc:18596441 1300.8