Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte19g01191 ATGGGGGATCCGACCCACCTGGAAAGATTGGGCAGAGAACTCAGGTGCCCTGTCTGTTTGAGCTTACTGAATTCTGCAGTTTCACTCACGTGCAATCATGTATTCTGCCGCTTATGCATTATGCAATCGATGAAATCAACTGCCAGTTGCCCAGTTTGTAAAGTGCCTTTTCATAGGCGAGAGGTCCGTCCTGCTCCCAACATGGATAGCTTAGTGAGCATTTACAAGAGCATGGAAGTTGCTTCAGGAGTCAATATATTTGTATCTCAGAATGTCCCTGATACCGAAGTGCCAGATGGACATACACTGGTTACTCTTGATGGTAAGATCAACCCTGAAATTCATGATCAAGCTGTGACCAAACAAACTCTTCAAGGAAAGGGGCTCCAAGATAAAACTAATTCTGAATCCACATCTGTCAAACCTTCATTTCCTACAAAGAAAAGGGTGCAGGTGCCTCGTAGTCTTCTTGCAGAATCACCATTTCAATTTGGGAAGTTCCAAAGTGGTTCAAGTGAAAGTATAAAGGAAGGCCCACAAAACGGGCAAGCAATGTTCAGCGAAACTCCTATCTGTGATGGAAAGGGTGACTTTTTCCCATCACCTTTCTTTTGGTTGAGGGAAGAGGAGGATGCTGTGGATTTAAGTGAGCAGACTTTAGGGGATCAATCAACTGATACGTCAACCAGAGTAGCACCCTCATTCAGTGATGTCATGGAGTATGGTGATGGAAAACCTTCAGAAACAGCCCAATCAGGTGAATTGCATGAGAAACCCTTTGTTGAGTTCTTCGACAGTGAGATGTTTGAATGGACACAAAAACCTTGCTCGCCTGAACTTTGTTCAAGTCCATGTAATATGCAGGTTGGAGATTCTGATGAAATTGATGGAAACTTACTCACTGAAAACCACAGATATGCTTTTAATGACTGTTCTGAAGATTTCATTGATGATAATAGTAGGAATAAGCTGCATGCTCTCGTCAATGCAACAGAGCCTAAATATGAAAGTGTTATTGCTTTCACAAATAAAGAAGAGGCCACAAATAATGGCATCAGAAATGGTGAAACCAGCCAATTGTATCCTGAAAAACTTATCAATATGAAGAAAGCTGGAAGAAACCAGAAGGCATGCACTCAACGGATGCTGGAGAGACGGAGTGATTCTGTTGAAAGCAACCTTGTAAAGAGAGAACAGATGTCAAGGCAATCTCGGACTAATAGCAAAGGTGGATTCAGGTTGTCCAATTCTCGTGTTCCTCTGGCAGATTCTGAGAAGAAGGTTGATGTTAATAATAAATTATCTAGAAAGTATAAGGGTTGTAGTAAAGAATATAGAAGTATAAAGAAATTAGAAGTTACTAAAAGCACATTGTGGGAGAAGGAAACCAAACCACTTGAAAGGATTCAAATTATTCCTGATGTCTGCATTCTGAACAATTCATCATCTTCAAGAAGCTTCTTTCCATTGGACGAAGTGATTCTAAGGAAATGTGAGACCCATCTTATAAACTATGACTGTGAATTTTGCCTTTCTTCAGAAGAATCAGAGGCTTCTGGTGAAATGTTGCACTATTGTAATGGTAAGAGTGTTGCAGCTGATTGTGATGGCGGAACCAAGGTCATACATTCCCACAGAAATTGCGCTGAGTGGGCTCCTAATGTATATTTTCAAGATGATAGTGCAGTTAATCTTGAGGCTGAATTATCTAGAAGTCAGAGAATAAAATGCAGCTTATGTGGGCTAAAAGGTGCAGCTCTTGGTTGTTATGAGAAACGTTGTCGTAGAAGCTTCCATGTTCCATGTGCAAAGTTGACTCCATGTTTTCGATGGGATGAGGATAATTTTGTCATGTTATGCCCTGTTCATGCATCTGCAAAGTTACCCTGTGAAAAGATTGAATCACAAGAGAAGGAAAAAAAAGGCAGTCCTCAATGTGATAATCTTCTTGGTGAGCATGATTGCAATATGAAGCAAATCTGGAGAACTCAAGGGTTTGGCAGAAAGATTGTTGTTTGTTGTTCATCACTGACTGTTCCACAGAGGAATGTTGTCTCTGAGTTTGAGAGGTTATCCAAAGTTTCAATTTTAAAGAAGTGGGATTCAAGTGTCACCCATGTTATAGCGTCCACAGATGAAAATGGTGCATGCCGAAGAACCCTTAAAACTTTGATGGGAATACTAGATGGCAAGTGGATACTCAAAATAGATTGGATTAAAGCTTGCATCAAGGCCATGAAGCCTGTTGATGAACAGCCATATGAGATTAGCGTTGATGTCCATGGAATCAGGGATGGTCCTTGCCTTGGAAGGCTCAGAGTATTTAACAAGCAACCACAGATCTTCGATGGATTGAAGTTCTATCTTTCGGGAGATTTTATACCATCCTACAAGGCTTATCTCCAAGATCTTGTCATTGCTGCTGGAGGGATGATTTTGCACCGAAAACCAGTCACAGAGGAGTTAAATGCCCCATCTTATGATTCTTTTACTCCTAGAACTTATATAATCTACAGCCTTGAGCTGCCAGATAAATTTGATTCTAGCAAAGAGGACATCTTCAGTCATAGGAAAAATAATGCTGCAGCTCTGGCAAATTTAACAGGAGCTGAAGTGGCCAGCAATTTATGGATCTTGAATTGCATTGCAGCCAGCAAGTTACTAATGGTTGATGCTGTTAGTTTAATCTAA 2691 0.4073 MGDPTHLERLGRELRCPVCLSLLNSAVSLTCNHVFCRLCIMQSMKSTASCPVCKVPFHRREVRPAPNMDSLVSIYKSMEVASGVNIFVSQNVPDTEVPDGHTLVTLDGKINPEIHDQAVTKQTLQGKGLQDKTNSESTSVKPSFPTKKRVQVPRSLLAESPFQFGKFQSGSSESIKEGPQNGQAMFSETPICDGKGDFFPSPFFWLREEEDAVDLSEQTLGDQSTDTSTRVAPSFSDVMEYGDGKPSETAQSGELHEKPFVEFFDSEMFEWTQKPCSPELCSSPCNMQVGDSDEIDGNLLTENHRYAFNDCSEDFIDDNSRNKLHALVNATEPKYESVIAFTNKEEATNNGIRNGETSQLYPEKLINMKKAGRNQKACTQRMLERRSDSVESNLVKREQMSRQSRTNSKGGFRLSNSRVPLADSEKKVDVNNKLSRKYKGCSKEYRSIKKLEVTKSTLWEKETKPLERIQIIPDVCILNNSSSSRSFFPLDEVILRKCETHLINYDCEFCLSSEESEASGEMLHYCNGKSVAADCDGGTKVIHSHRNCAEWAPNVYFQDDSAVNLEAELSRSQRIKCSLCGLKGAALGCYEKRCRRSFHVPCAKLTPCFRWDEDNFVMLCPVHASAKLPCEKIESQEKEKKGSPQCDNLLGEHDCNMKQIWRTQGFGRKIVVCCSSLTVPQRNVVSEFERLSKVSILKKWDSSVTHVIASTDENGACRRTLKTLMGILDGKWILKIDWIKACIKAMKPVDEQPYEISVDVHGIRDGPCLGRLRVFNKQPQIFDGLKFYLSGDFIPSYKAYLQDLVIAAGGMILHRKPVTEELNAPSYDSFTPRTYIIYSLELPDKFDSSKEDIFSHRKNNAAALANLTGAEVASNLWILNCIAASKLLMVDAVSLI* 897
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte19g01191 896 SMART PHD_3 576 624 IPR001965 -
Pte19g01191 896 ProSitePatterns Zinc finger RING-type signature. 31 40 IPR017907 -
Pte19g01191 896 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 503 626 IPR013083 -
Pte19g01191 896 Pfam PHD-like zinc-binding domain 545 623 - -
Pte19g01191 896 SMART BRCT_7 779 885 IPR001357 -
Pte19g01191 896 SMART BRCT_7 664 746 IPR001357 -
Pte19g01191 896 FunFam Breast cancer type 1 susceptibility protein homolog 667 773 - -
Pte19g01191 896 MobiDBLite consensus disorder prediction 162 187 - -
Pte19g01191 896 MobiDBLite consensus disorder prediction 396 414 - -
Pte19g01191 896 ProSiteProfiles BRCT domain profile. 777 895 IPR001357 -
Pte19g01191 896 MobiDBLite consensus disorder prediction 388 416 - -
Pte19g01191 896 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 84 IPR013083 -
Pte19g01191 896 SMART ring_2 577 623 IPR001841 -
Pte19g01191 896 SMART ring_2 16 53 IPR001841 -
Pte19g01191 896 ProSiteProfiles Extended PHD (ePHD) domain profile. 504 624 IPR034732 -
Pte19g01191 896 MobiDBLite consensus disorder prediction 123 145 - -
Pte19g01191 896 FunFam Breast cancer associated RING 1 1 86 - -
Pte19g01191 896 Pfam Zinc finger, C3HC4 type (RING finger) 15 53 - -
Pte19g01191 896 Gene3D BRCT domain 667 771 IPR036420 -
Pte19g01191 896 PANTHER BREAST CANCER TYPE 1 SUSCEPTIBILITY PROTEIN BRCA1 5 891 IPR031099 GO:0006281|GO:0006974
Pte19g01191 896 ProSiteProfiles BRCT domain profile. 702 756 IPR001357 -
Pte19g01191 896 ProSiteProfiles Zinc finger RING-type profile. 16 54 IPR001841 -
Pte19g01191 896 MobiDBLite consensus disorder prediction 123 193 - -
Pte19g01191 896 Gene3D BRCT domain 778 885 IPR036420 -
Pte19g01191 896 Pfam BRCT domain, a BRCA1 C-terminus domain 779 890 IPR001357 -
Pte19g01191 896 Pfam BRCA1 C Terminus (BRCT) domain 670 743 IPR001357 -
Pte19g01191 896 CDD ePHD 545 623 - -
Pte19g01191 896 CDD BRCT_Bard1_rpt1 670 749 - -
Pte19g01191 896 SUPERFAMILY BRCT domain 780 889 IPR036420 -
Pte19g01191 896 SUPERFAMILY BRCT domain 670 774 IPR036420 -
Pte19g01191 896 SUPERFAMILY RING/U-box 7 78 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte19g01191 Pte-Chr19 17897681 17903763 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte19g01191 14 62 C3H Transcription Factor Family AT5G54990 48.077 5.04e-07 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte19g01191 K10683 - gmx:100789372 780.785