Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Pte19g01189 | ATGGGGGATCCGACCCACCTGGAAAGATTGGGCAGAGAACTCAGGTGCCCTGTCTGTTTGAGCTTACTGAATTCTGCAGTTTCACTCACGTGCAATCATGTATTCTGCCGCTTATGCATTATGCAATCGATGAAATCAACTGCCAGTTGCCCAGTTTGTAAAGTGCCTTTTCATAGGCGAGAGGTCCGTCCTGCTCCCAACATGGATAGCTTAGTGAGCATTTACAAGAGCATGGAAGTTGCTTCAGGAGTCAATATATTTGTATCTCAGAATGTCCCTGATACCGAAGTGCCAGATGGACATACACTGGTTACTCTTGATGGTAAGATCAACCCTGAAATTCATGATCAAGCTGTGACCAAACAAACTCTTCAAGGAAAGGGGCTCCAAGATAAAACTAATTCTGAATCCACATCTGTCAAACCTTCATTTCCTACAAAGAAAAGGGTGCAGGTGCCTCGTAGTCCTCTTGCAGAATCACCATTTCAATGTGGGAAGTTCCAAAGTGGTTCAAGTGAAAGTATAAAGGAAGGCCCACAAAACGGGCAAGCAATGTTCAGCGAAACTCCTATCTGTGATGGAAAGGGTGACTTTTTCCCATCACCTTTCTTTTGGTTGAGGGAAGAGGAGGATGCTGTGGATTTAAGTGAGCAGACTTTAGGGGATCAATCAACTGATACGTCAACCAGAGTAGCACCCTCATTCAGTGATGTCATGGAGTATGGTGATGGAAAACCTTCAGAAACAGCCCAATCAGGTGAATTGCATGAGAAACCCTTTGTTGAGTTCTTCGACAGTGAGATGTTTGAATGGACACAAAAACCTTGCTCGCCTGAACTTTGTTCAAGTCCATGTAATATGCAGGTTGGAGATTCTGATGAAATTGATGGAAACTGTGAGAATTTTCTGACAGCAGGGTCAACAGTGAATACAAATCAAGCTGGCAAGAATTTAAAAGGTGAGAACTACAAACAGGAAAGCTTTGATGTCATAATGAAACCCGGCATATCCTCCGATGGAATAAGAGATTCTGATGATCAATTTATGAGAGTCAGATCGAGGAAGAGAGCAAGGGTAGGAACTGTTGAACAAGCAAAGTTCACAAAAAAGGACCCAGCTGTTTCCCTAATCGATTCAAATAAATTAACAGTACTCACTGAAAACCACAGATATGCTTTTAATGACTGTTCTGAAGATTTCATTGATGATAATAGTAGGAATAAGCTGCATGCTCTCGTCAATGCAACAGAGCCTAAATATGAAAGTGTTATTGCTTTCACAAATAAAGAAGAGGCCACAAATAATGGCATCAGAAATGGTGAAACCAGCCAATTGTATCCTGAAAAACTTATCAATATGAAGAAAGCTGGAAGAAACCAGAAGGCATGCACTCAACGGATGCTGGAGAGACGGAGTGATTCTGTTGAAAGCAACCTTGTAAAGAGAGAACAGATGTCAAGGCAATCTCGGACTAATAGCAAAGGTGGATTCAGGTTGTCCAATTCTCGTGTTCCTCTGGCAGATTCTGAGACGAAGGTTGATGTTAATAATAAATTATCTAGAAAGTATAAGGGTTGTAGTAAAGAATATAGAAGTATAAAGAAATTAGAAGTTACTAAAAGCACATTGTGGGAGAAGGAAACCAAACCACTTGAAAGGATTCAAATTATTCCTGATGTCTGCATTCTGAACAATTCATCATCTTCAAGAAGCTTCTTTCCATTGGACGAAGTGATTCTAAGGAAATGTGAGACCCATCTTATAAACTATGACTGTGAATTTTGCCTTTCTTCAGAAGAATCAGAGGCTTCTGGTGAAATGTTGCACTATTGTAATGGTAAGAGTGTTGCAGCTGATTGTGATGGTGGAACCAAGGTCATACATTCCCACAGAAATTGCGCTGAGTGGGCTCCTAATGTATATTTTCAAGATGATAGTGCAGTTAATCTTGAGGCTGAATTATCTAGAAGTCAGAGAATAAAATGCAGCTTATGTGGGCTAAAAGGTGCAGCTCTTGGTTGTTATGAGAAACGTTGTCGTAGAAGCTTCCATGTTCCATGTGCAAAGTTGACTCCATGTTTTCGATGGGATGAGGATAATTTTGTCATGTTATGCCCTGTTCATGCATCTGCAAAGTTACCCTGTGAAAAGATTGAATCACAAGAGAAGGAAAAAAAAGGCAGTCCTCAATGTGATAATCTTCTTGGTGAGCATGATTGCAATATGAAGCAAATCTGGAGAACTCAAGGGTTTCGCAGAAAGATTGTTGTTTGTTGTTCATCACTGACTGTTCCACAGAGGAATGTTGTCTCTGAGTTTGAGAGGTTATCCAAAGTTTCAATTTTAAAGAAGTGGGATTCAAGTGTCACCCATGTTATAGCGTCCACAGATGAAAATGGTGCATGCCGAAGAACCCTTAAAACTTTGATGGGAATACTAGATGGCAAGTGGATACTCAAAATAGATTGGATTAAAGCTTGCATCAAGGCCATGAAGCCTGTTGATGAACAGCCATATGAGATTAGCGTTGATGTCCATGGAATCAGGGATGGTCCTTGCCTTGGAAGGCTCAGAGTATTTAACAAGCAACCACAGATCTTCGATGGATTAAAGTTCTATCTTTCGGGAGATTTTATACCATCCTACAAAGCTTATCTCCAAGATCTTGTCATTGCTGCTGGAGGGATGATTTTGCACCGAAAACCAGTCACAGAGGAGTTAAATGCCCCATCTTATGATTCTTTTACTCCTAGAACTTATATAATCTACAGCCTTGAGCTGCCAGATAAATTTGATTCTAGCAAAGAGGACATCTTCAGTCATAGGAAAAATAATGCTGCAGCTCTGGCAAATTTAACAGGAGCTGAAGTGGCCAGCAATTTATGGATCTTGAATTGCATTGCAGCCAGCAAGTTACTAATGGTTGATGCTGTTAGTTTAATCTAA | 2946 | 0.406 | MGDPTHLERLGRELRCPVCLSLLNSAVSLTCNHVFCRLCIMQSMKSTASCPVCKVPFHRREVRPAPNMDSLVSIYKSMEVASGVNIFVSQNVPDTEVPDGHTLVTLDGKINPEIHDQAVTKQTLQGKGLQDKTNSESTSVKPSFPTKKRVQVPRSPLAESPFQCGKFQSGSSESIKEGPQNGQAMFSETPICDGKGDFFPSPFFWLREEEDAVDLSEQTLGDQSTDTSTRVAPSFSDVMEYGDGKPSETAQSGELHEKPFVEFFDSEMFEWTQKPCSPELCSSPCNMQVGDSDEIDGNCENFLTAGSTVNTNQAGKNLKGENYKQESFDVIMKPGISSDGIRDSDDQFMRVRSRKRARVGTVEQAKFTKKDPAVSLIDSNKLTVLTENHRYAFNDCSEDFIDDNSRNKLHALVNATEPKYESVIAFTNKEEATNNGIRNGETSQLYPEKLINMKKAGRNQKACTQRMLERRSDSVESNLVKREQMSRQSRTNSKGGFRLSNSRVPLADSETKVDVNNKLSRKYKGCSKEYRSIKKLEVTKSTLWEKETKPLERIQIIPDVCILNNSSSSRSFFPLDEVILRKCETHLINYDCEFCLSSEESEASGEMLHYCNGKSVAADCDGGTKVIHSHRNCAEWAPNVYFQDDSAVNLEAELSRSQRIKCSLCGLKGAALGCYEKRCRRSFHVPCAKLTPCFRWDEDNFVMLCPVHASAKLPCEKIESQEKEKKGSPQCDNLLGEHDCNMKQIWRTQGFRRKIVVCCSSLTVPQRNVVSEFERLSKVSILKKWDSSVTHVIASTDENGACRRTLKTLMGILDGKWILKIDWIKACIKAMKPVDEQPYEISVDVHGIRDGPCLGRLRVFNKQPQIFDGLKFYLSGDFIPSYKAYLQDLVIAAGGMILHRKPVTEELNAPSYDSFTPRTYIIYSLELPDKFDSSKEDIFSHRKNNAAALANLTGAEVASNLWILNCIAASKLLMVDAVSLI* | 982 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Pte19g01189 | 981 | SMART | PHD_3 | 661 | 709 | IPR001965 | - | |
Pte19g01189 | 981 | ProSitePatterns | Zinc finger RING-type signature. | 31 | 40 | IPR017907 | - | |
Pte19g01189 | 981 | FunFam | Breast cancer type 1 susceptibility protein homolog | 752 | 858 | - | - | |
Pte19g01189 | 981 | Pfam | BRCT domain, a BRCA1 C-terminus domain | 864 | 975 | IPR001357 | - | |
Pte19g01189 | 981 | SMART | BRCT_7 | 748 | 831 | IPR001357 | - | |
Pte19g01189 | 981 | SMART | BRCT_7 | 864 | 970 | IPR001357 | - | |
Pte19g01189 | 981 | MobiDBLite | consensus disorder prediction | 162 | 187 | - | - | |
Pte19g01189 | 981 | Gene3D | BRCT domain | 751 | 856 | IPR036420 | - | |
Pte19g01189 | 981 | ProSiteProfiles | BRCT domain profile. | 787 | 841 | IPR001357 | - | |
Pte19g01189 | 981 | ProSiteProfiles | Extended PHD (ePHD) domain profile. | 589 | 709 | IPR034732 | - | |
Pte19g01189 | 981 | Pfam | PHD-like zinc-binding domain | 630 | 708 | - | - | |
Pte19g01189 | 981 | MobiDBLite | consensus disorder prediction | 473 | 501 | - | - | |
Pte19g01189 | 981 | SMART | ring_2 | 662 | 708 | IPR001841 | - | |
Pte19g01189 | 981 | SMART | ring_2 | 16 | 53 | IPR001841 | - | |
Pte19g01189 | 981 | MobiDBLite | consensus disorder prediction | 123 | 145 | - | - | |
Pte19g01189 | 981 | MobiDBLite | consensus disorder prediction | 123 | 189 | - | - | |
Pte19g01189 | 981 | SUPERFAMILY | RING/U-box | 7 | 78 | - | - | |
Pte19g01189 | 981 | Gene3D | BRCT domain | 863 | 970 | IPR036420 | - | |
Pte19g01189 | 981 | PANTHER | BREAST CANCER TYPE 1 SUSCEPTIBILITY PROTEIN BRCA1 | 5 | 976 | IPR031099 | GO:0006281|GO:0006974 | |
Pte19g01189 | 981 | MobiDBLite | consensus disorder prediction | 481 | 501 | - | - | |
Pte19g01189 | 981 | ProSiteProfiles | BRCT domain profile. | 862 | 980 | IPR001357 | - | |
Pte19g01189 | 981 | SUPERFAMILY | BRCT domain | 865 | 974 | IPR036420 | - | |
Pte19g01189 | 981 | ProSiteProfiles | Zinc finger RING-type profile. | 16 | 54 | IPR001841 | - | |
Pte19g01189 | 981 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 3 | 84 | IPR013083 | - | |
Pte19g01189 | 981 | SUPERFAMILY | BRCT domain | 755 | 859 | IPR036420 | - | |
Pte19g01189 | 981 | CDD | ePHD | 630 | 708 | - | - | |
Pte19g01189 | 981 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 588 | 711 | IPR013083 | - | |
Pte19g01189 | 981 | FunFam | Breast cancer associated RING 1 | 1 | 86 | - | - | |
Pte19g01189 | 981 | CDD | BRCT_Bard1_rpt1 | 755 | 834 | - | - | |
Pte19g01189 | 981 | Pfam | BRCA1 C Terminus (BRCT) domain | 754 | 828 | IPR001357 | - | |
Pte19g01189 | 981 | Pfam | Zinc finger, C3HC4 type (RING finger) | 15 | 53 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Pte19g01189 | Pte-Chr19 | 17570344 | 17581825 | Dispersed/Proximal |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Pte19g01189 | 14 | 62 | C3H Transcription Factor Family | AT5G54990 | 48.077 | 5.20e-07 | 50.1 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Pte19g01189 | K10683 | - | qsu:112005203 | 858.211 |