Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte19g01189 ATGGGGGATCCGACCCACCTGGAAAGATTGGGCAGAGAACTCAGGTGCCCTGTCTGTTTGAGCTTACTGAATTCTGCAGTTTCACTCACGTGCAATCATGTATTCTGCCGCTTATGCATTATGCAATCGATGAAATCAACTGCCAGTTGCCCAGTTTGTAAAGTGCCTTTTCATAGGCGAGAGGTCCGTCCTGCTCCCAACATGGATAGCTTAGTGAGCATTTACAAGAGCATGGAAGTTGCTTCAGGAGTCAATATATTTGTATCTCAGAATGTCCCTGATACCGAAGTGCCAGATGGACATACACTGGTTACTCTTGATGGTAAGATCAACCCTGAAATTCATGATCAAGCTGTGACCAAACAAACTCTTCAAGGAAAGGGGCTCCAAGATAAAACTAATTCTGAATCCACATCTGTCAAACCTTCATTTCCTACAAAGAAAAGGGTGCAGGTGCCTCGTAGTCCTCTTGCAGAATCACCATTTCAATGTGGGAAGTTCCAAAGTGGTTCAAGTGAAAGTATAAAGGAAGGCCCACAAAACGGGCAAGCAATGTTCAGCGAAACTCCTATCTGTGATGGAAAGGGTGACTTTTTCCCATCACCTTTCTTTTGGTTGAGGGAAGAGGAGGATGCTGTGGATTTAAGTGAGCAGACTTTAGGGGATCAATCAACTGATACGTCAACCAGAGTAGCACCCTCATTCAGTGATGTCATGGAGTATGGTGATGGAAAACCTTCAGAAACAGCCCAATCAGGTGAATTGCATGAGAAACCCTTTGTTGAGTTCTTCGACAGTGAGATGTTTGAATGGACACAAAAACCTTGCTCGCCTGAACTTTGTTCAAGTCCATGTAATATGCAGGTTGGAGATTCTGATGAAATTGATGGAAACTGTGAGAATTTTCTGACAGCAGGGTCAACAGTGAATACAAATCAAGCTGGCAAGAATTTAAAAGGTGAGAACTACAAACAGGAAAGCTTTGATGTCATAATGAAACCCGGCATATCCTCCGATGGAATAAGAGATTCTGATGATCAATTTATGAGAGTCAGATCGAGGAAGAGAGCAAGGGTAGGAACTGTTGAACAAGCAAAGTTCACAAAAAAGGACCCAGCTGTTTCCCTAATCGATTCAAATAAATTAACAGTACTCACTGAAAACCACAGATATGCTTTTAATGACTGTTCTGAAGATTTCATTGATGATAATAGTAGGAATAAGCTGCATGCTCTCGTCAATGCAACAGAGCCTAAATATGAAAGTGTTATTGCTTTCACAAATAAAGAAGAGGCCACAAATAATGGCATCAGAAATGGTGAAACCAGCCAATTGTATCCTGAAAAACTTATCAATATGAAGAAAGCTGGAAGAAACCAGAAGGCATGCACTCAACGGATGCTGGAGAGACGGAGTGATTCTGTTGAAAGCAACCTTGTAAAGAGAGAACAGATGTCAAGGCAATCTCGGACTAATAGCAAAGGTGGATTCAGGTTGTCCAATTCTCGTGTTCCTCTGGCAGATTCTGAGACGAAGGTTGATGTTAATAATAAATTATCTAGAAAGTATAAGGGTTGTAGTAAAGAATATAGAAGTATAAAGAAATTAGAAGTTACTAAAAGCACATTGTGGGAGAAGGAAACCAAACCACTTGAAAGGATTCAAATTATTCCTGATGTCTGCATTCTGAACAATTCATCATCTTCAAGAAGCTTCTTTCCATTGGACGAAGTGATTCTAAGGAAATGTGAGACCCATCTTATAAACTATGACTGTGAATTTTGCCTTTCTTCAGAAGAATCAGAGGCTTCTGGTGAAATGTTGCACTATTGTAATGGTAAGAGTGTTGCAGCTGATTGTGATGGTGGAACCAAGGTCATACATTCCCACAGAAATTGCGCTGAGTGGGCTCCTAATGTATATTTTCAAGATGATAGTGCAGTTAATCTTGAGGCTGAATTATCTAGAAGTCAGAGAATAAAATGCAGCTTATGTGGGCTAAAAGGTGCAGCTCTTGGTTGTTATGAGAAACGTTGTCGTAGAAGCTTCCATGTTCCATGTGCAAAGTTGACTCCATGTTTTCGATGGGATGAGGATAATTTTGTCATGTTATGCCCTGTTCATGCATCTGCAAAGTTACCCTGTGAAAAGATTGAATCACAAGAGAAGGAAAAAAAAGGCAGTCCTCAATGTGATAATCTTCTTGGTGAGCATGATTGCAATATGAAGCAAATCTGGAGAACTCAAGGGTTTCGCAGAAAGATTGTTGTTTGTTGTTCATCACTGACTGTTCCACAGAGGAATGTTGTCTCTGAGTTTGAGAGGTTATCCAAAGTTTCAATTTTAAAGAAGTGGGATTCAAGTGTCACCCATGTTATAGCGTCCACAGATGAAAATGGTGCATGCCGAAGAACCCTTAAAACTTTGATGGGAATACTAGATGGCAAGTGGATACTCAAAATAGATTGGATTAAAGCTTGCATCAAGGCCATGAAGCCTGTTGATGAACAGCCATATGAGATTAGCGTTGATGTCCATGGAATCAGGGATGGTCCTTGCCTTGGAAGGCTCAGAGTATTTAACAAGCAACCACAGATCTTCGATGGATTAAAGTTCTATCTTTCGGGAGATTTTATACCATCCTACAAAGCTTATCTCCAAGATCTTGTCATTGCTGCTGGAGGGATGATTTTGCACCGAAAACCAGTCACAGAGGAGTTAAATGCCCCATCTTATGATTCTTTTACTCCTAGAACTTATATAATCTACAGCCTTGAGCTGCCAGATAAATTTGATTCTAGCAAAGAGGACATCTTCAGTCATAGGAAAAATAATGCTGCAGCTCTGGCAAATTTAACAGGAGCTGAAGTGGCCAGCAATTTATGGATCTTGAATTGCATTGCAGCCAGCAAGTTACTAATGGTTGATGCTGTTAGTTTAATCTAA 2946 0.406 MGDPTHLERLGRELRCPVCLSLLNSAVSLTCNHVFCRLCIMQSMKSTASCPVCKVPFHRREVRPAPNMDSLVSIYKSMEVASGVNIFVSQNVPDTEVPDGHTLVTLDGKINPEIHDQAVTKQTLQGKGLQDKTNSESTSVKPSFPTKKRVQVPRSPLAESPFQCGKFQSGSSESIKEGPQNGQAMFSETPICDGKGDFFPSPFFWLREEEDAVDLSEQTLGDQSTDTSTRVAPSFSDVMEYGDGKPSETAQSGELHEKPFVEFFDSEMFEWTQKPCSPELCSSPCNMQVGDSDEIDGNCENFLTAGSTVNTNQAGKNLKGENYKQESFDVIMKPGISSDGIRDSDDQFMRVRSRKRARVGTVEQAKFTKKDPAVSLIDSNKLTVLTENHRYAFNDCSEDFIDDNSRNKLHALVNATEPKYESVIAFTNKEEATNNGIRNGETSQLYPEKLINMKKAGRNQKACTQRMLERRSDSVESNLVKREQMSRQSRTNSKGGFRLSNSRVPLADSETKVDVNNKLSRKYKGCSKEYRSIKKLEVTKSTLWEKETKPLERIQIIPDVCILNNSSSSRSFFPLDEVILRKCETHLINYDCEFCLSSEESEASGEMLHYCNGKSVAADCDGGTKVIHSHRNCAEWAPNVYFQDDSAVNLEAELSRSQRIKCSLCGLKGAALGCYEKRCRRSFHVPCAKLTPCFRWDEDNFVMLCPVHASAKLPCEKIESQEKEKKGSPQCDNLLGEHDCNMKQIWRTQGFRRKIVVCCSSLTVPQRNVVSEFERLSKVSILKKWDSSVTHVIASTDENGACRRTLKTLMGILDGKWILKIDWIKACIKAMKPVDEQPYEISVDVHGIRDGPCLGRLRVFNKQPQIFDGLKFYLSGDFIPSYKAYLQDLVIAAGGMILHRKPVTEELNAPSYDSFTPRTYIIYSLELPDKFDSSKEDIFSHRKNNAAALANLTGAEVASNLWILNCIAASKLLMVDAVSLI* 982
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte19g01189 981 SMART PHD_3 661 709 IPR001965 -
Pte19g01189 981 ProSitePatterns Zinc finger RING-type signature. 31 40 IPR017907 -
Pte19g01189 981 FunFam Breast cancer type 1 susceptibility protein homolog 752 858 - -
Pte19g01189 981 Pfam BRCT domain, a BRCA1 C-terminus domain 864 975 IPR001357 -
Pte19g01189 981 SMART BRCT_7 748 831 IPR001357 -
Pte19g01189 981 SMART BRCT_7 864 970 IPR001357 -
Pte19g01189 981 MobiDBLite consensus disorder prediction 162 187 - -
Pte19g01189 981 Gene3D BRCT domain 751 856 IPR036420 -
Pte19g01189 981 ProSiteProfiles BRCT domain profile. 787 841 IPR001357 -
Pte19g01189 981 ProSiteProfiles Extended PHD (ePHD) domain profile. 589 709 IPR034732 -
Pte19g01189 981 Pfam PHD-like zinc-binding domain 630 708 - -
Pte19g01189 981 MobiDBLite consensus disorder prediction 473 501 - -
Pte19g01189 981 SMART ring_2 662 708 IPR001841 -
Pte19g01189 981 SMART ring_2 16 53 IPR001841 -
Pte19g01189 981 MobiDBLite consensus disorder prediction 123 145 - -
Pte19g01189 981 MobiDBLite consensus disorder prediction 123 189 - -
Pte19g01189 981 SUPERFAMILY RING/U-box 7 78 - -
Pte19g01189 981 Gene3D BRCT domain 863 970 IPR036420 -
Pte19g01189 981 PANTHER BREAST CANCER TYPE 1 SUSCEPTIBILITY PROTEIN BRCA1 5 976 IPR031099 GO:0006281|GO:0006974
Pte19g01189 981 MobiDBLite consensus disorder prediction 481 501 - -
Pte19g01189 981 ProSiteProfiles BRCT domain profile. 862 980 IPR001357 -
Pte19g01189 981 SUPERFAMILY BRCT domain 865 974 IPR036420 -
Pte19g01189 981 ProSiteProfiles Zinc finger RING-type profile. 16 54 IPR001841 -
Pte19g01189 981 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 84 IPR013083 -
Pte19g01189 981 SUPERFAMILY BRCT domain 755 859 IPR036420 -
Pte19g01189 981 CDD ePHD 630 708 - -
Pte19g01189 981 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 588 711 IPR013083 -
Pte19g01189 981 FunFam Breast cancer associated RING 1 1 86 - -
Pte19g01189 981 CDD BRCT_Bard1_rpt1 755 834 - -
Pte19g01189 981 Pfam BRCA1 C Terminus (BRCT) domain 754 828 IPR001357 -
Pte19g01189 981 Pfam Zinc finger, C3HC4 type (RING finger) 15 53 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte19g01189 Pte-Chr19 17570344 17581825 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte19g01189 14 62 C3H Transcription Factor Family AT5G54990 48.077 5.20e-07 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte19g01189 K10683 - qsu:112005203 858.211