Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte19g01183 ATGAAGAGGAACTGTAACTTGGAACTTCGTCTTCTTCCTCTATTTCCAGACACTGATCACCAGCAGCACCTCAGCAGCACCCGCTACAGCCAATCGATGATGAGTGATGTGAATGGAAGTGTCCAACAACAAGAGCAGCAGCAGCAGCAACAGAAGCTGACCCTATTCTACGATGGGAACATCTGTGTTTCTGATGTTACAGAGCTTCAGGCTAGAGCTATATTAAGACTTGCAAGCAGAGAAATGGATATGGCGAGAGGTGAAGGAACTCCAACTCCAAGATCAGGACCATCTTCTCCAGATCTAACAGTAATGCAATATTCTCAATATCCTAACCAATTGTGCAGCCCAACTAGCGGGCTTTCAATGAAAAGATCTCTGCAAAGGTTCCTACAAAAGAGAAAGAATAGGATCCAAGATGGATCTCCATACTAG 435 0.446 MKRNCNLELRLLPLFPDTDHQQHLSSTRYSQSMMSDVNGSVQQQEQQQQQQKLTLFYDGNICVSDVTELQARAILRLASREMDMARGEGTPTPRSGPSSPDLTVMQYSQYPNQLCSPTSGLSMKRSLQRFLQKRKNRIQDGSPY* 145
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte19g01183 144 Pfam tify domain 47 79 IPR010399 -
Pte19g01183 144 ProSiteProfiles Tify domain profile. 46 80 IPR010399 -
Pte19g01183 144 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 27 144 IPR040390 -
Pte19g01183 144 SMART tify_2 46 80 IPR010399 -
Pte19g01183 144 Pfam Jas motif 124 144 IPR018467 -
Pte19g01183 144 MobiDBLite consensus disorder prediction 82 101 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte19g01183 Pte-Chr19 15806641 15807545 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte19g01183 1 144 Tify Gene Family AT1G30135 42.069 2.60e-24 89.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Pte19g01183 tify 1.8e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte19g01183 - - jcu:105634005 129.028