LGRPv2

Gene search

Sequence information

Show entries

Search:

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pte19g01104	ATGCTACTGGTTCTTCTAGTCATTTACTCAGCTTGGATTTGCCCATTCGAGTTTGCCTTTCTGGCTTACAAGGAAGACACACTGTTCATCGTTGACAACATTGTGAATGGCTTCTTTGCCATTGACATAATCCTCGCATTCTTTGTTGCATATCTTGACAACCATTCTTACCTTCTTGTTGACAGCCCTAAGAAAATTGCAATCAGGTACATATCCACCTGGTTCATTTTTGATGTCTGCTCTACCATACCTTTCCAGTACATCAGCTCCTTGTTCAATGATCATAAAGGCAGTGACCTTGGGTATAAACTCCTTAACATGCTCAGACTCTGGCGTCTCAGACGAGTCAGCTCTCTTTTTGCAAGACTTGAGAAGGACATCCGCTTCAATTATTTCTGGACTAGGTGCATAAAGCTCATATCTGTGACCTTGTTTGCGGTACATTGCGCAGGATGTTTGAACTATCTGATAGCAGACAGATACCCAGATCCTAGAAGGACATGGATTGGTGCAATGAACCAAAATTTCAAACAAGAAAGTGTTTGGAACAGATATGTCACTGCAATGTATTGGTCTATTACCACACTTACTACCACTGGATATGGGGATTTGCATGCCGAGAATCCAAGAGAAATGCTGTTTGATATCTTCTACATGCTATTCAATCTGGGATTGACATCTTATCTCATTGGCAACATGACAAACCTTGTAGTACAGTGGACCAGCCGTACCAGAAACTTCAGAGATACAGTGAGAGCAGCTTCAGAATTTTCTACCAGAAACCATTTGCCCTCACGCATACAAGACCAAATGCTATCACACATATGCCTCAAGTTCAAAACAGAAGGACTGAAGCAGCAGGATACCTTAAATGGTTTGCCTAAAGCAATTCGTTCGAGCATTTCACGTTATTTGTTCCTCCCTTTTGTTCAGAAAGTGTATCTTTTTAAAGGGGCTTCCCATGACTTCCTTCTCCAGCTGGTTTCAGAAATGGAAGCTGAATTTTTCCCACCAAGAGAGGATGTACTTCTGCAGAATGAGGCTCCAACAGATCTTTATATACTGGTCTCAGGAGCTGTGGAAATGATATGCAGCCTTGAAGGGGATGAAAAAGTTATTGGGAAGGCTGTTGAAGGAGATACATTTGGAGAGATCGGCGTTTTGTATAACAGACCACAGCCTTATACAGTTCGGACAACAGAGTTATCTCAGATATTGAGACTTAGCAGAACATCTTTGATGAACATCACACAGGCCAATGCTGAAGACGGAGGTGCCATAATCATGGCAAATTATTTTCGGAGAATGAAAGGACAAGAAGGTTCAGGTCTCAGATATCCAGTTACAGATCCAGAACCAATCCTGTCTGACTTGCTTGAGAGAGGATCTCTGAGAGGAAGCTGTGCTCAAGAAGCTTATGCAGACCAATTACATGCAGATTCATTGATACCAGAAGGAAGAAATCTAAGTCTTGGAGAGTATGATGCTATGAATAATGAACAAATCAAACATGATTTCGTAATGAAAAATGCAAATGATGTCAATAGGACACCGGAAGCTTCAGGACAGAAGCAACAAAACAAGATTGGATTTCAACCCTTGCAAATTTACCATGACAAAGAAAGGCTAGATGAATATAAAATTGATTTATTGGGGACAGAAGTAGCAGACAACTCCAAAAAGATTCTCAGAGGAAATAGAAGAGAACATGATCCACAAGTTTCCATGTCCTCCTCAGAGAAGGTGCTGAAAAGCTTTTACTCGAGTGCATCAAGCTACCCCATATATGAAGATTCATGGAAGGGCGTCCAGAAGAGAGTAGTCATCCACATACAATGCGAACATGCAAGCACGAAACAGAGGAAGTATGGGAAGTTAATAATCCTACCTGATTCAATAGAAGAGCTGAAAATGATTGCAGGTGAAAAATTTGGATGCGACAAACCTATCAAAGTTATGAATGAGGATTATGCTGAGATTGATGACATAAGAGTCATACGAAATGGCGATCACTTGTTTTTTGTTCATGAGATGGAAGCTATGGATAGCGATGTAATAGTTATTTAA	2067	0.4074	MLLVLLVIYSAWICPFEFAFLAYKEDTLFIVDNIVNGFFAIDIILAFFVAYLDNHSYLLVDSPKKIAIRYISTWFIFDVCSTIPFQYISSLFNDHKGSDLGYKLLNMLRLWRLRRVSSLFARLEKDIRFNYFWTRCIKLISVTLFAVHCAGCLNYLIADRYPDPRRTWIGAMNQNFKQESVWNRYVTAMYWSITTLTTTGYGDLHAENPREMLFDIFYMLFNLGLTSYLIGNMTNLVVQWTSRTRNFRDTVRAASEFSTRNHLPSRIQDQMLSHICLKFKTEGLKQQDTLNGLPKAIRSSISRYLFLPFVQKVYLFKGASHDFLLQLVSEMEAEFFPPREDVLLQNEAPTDLYILVSGAVEMICSLEGDEKVIGKAVEGDTFGEIGVLYNRPQPYTVRTTELSQILRLSRTSLMNITQANAEDGGAIIMANYFRRMKGQEGSGLRYPVTDPEPILSDLLERGSLRGSCAQEAYADQLHADSLIPEGRNLSLGEYDAMNNEQIKHDFVMKNANDVNRTPEASGQKQQNKIGFQPLQIYHDKERLDEYKIDLLGTEVADNSKKILRGNRREHDPQVSMSSSEKVLKSFYSSASSYPIYEDSWKGVQKRVVIHIQCEHASTKQRKYGKLIILPDSIEELKMIAGEKFGCDKPIKVMNEDYAEIDDIRVIRNGDHLFFVHEMEAMDSDVIVI*	689

Showing 1 to 1 of 1 entries

Previous1Next

Annotation information

Show entries

Search:

Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Pte19g01104	688	Gene3D	-	1	239	-	-
Pte19g01104	688	SUPERFAMILY	Voltage-gated potassium channels	2	238	-	-
Pte19g01104	688	Pfam	KHA, dimerisation domain of potassium ion channel	605	674	IPR021789	-
Pte19g01104	688	PRINTS	EAG/ELK/ERG potassium channel family signature	229	238	IPR003938	GO:0005249\|GO:0006813\|GO:0016020
Pte19g01104	688	PRINTS	EAG/ELK/ERG potassium channel family signature	9	16	IPR003938	GO:0005249\|GO:0006813\|GO:0016020
Pte19g01104	688	PRINTS	EAG/ELK/ERG potassium channel family signature	32	42	IPR003938	GO:0005249\|GO:0006813\|GO:0016020
Pte19g01104	688	PRINTS	EAG/ELK/ERG potassium channel family signature	211	222	IPR003938	GO:0005249\|GO:0006813\|GO:0016020
Pte19g01104	688	PRINTS	EAG/ELK/ERG potassium channel family signature	185	202	IPR003938	GO:0005249\|GO:0006813\|GO:0016020
Pte19g01104	688	PRINTS	EAG/ELK/ERG potassium channel family signature	43	52	IPR003938	GO:0005249\|GO:0006813\|GO:0016020
Pte19g01104	688	Pfam	Ion transport protein	1	244	IPR005821	GO:0005216\|GO:0006811\|GO:0016020\|GO:0055085

Showing 1 to 10 of 20 entries

Previous1 2Next

Duplication type information

Show entries

Search:

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pte19g01104	Pte-Chr19	11688740	11693164	Transposed

Showing 1 to 1 of 1 entries

Previous1Next

Functional genes information

Show entries

Search:

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pte19g01104	1	674	Ion Channels	AT5G46240	58.309	0.0	767

Showing 1 to 1 of 1 entries

Previous1Next

Pathway information

Show entries

Search:

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pte19g01104	K21867		-	zju:107413728	858.981

Showing 1 to 1 of 1 entries

Previous1Next

Event-related genes

Show entries

Search:

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Pte19g01104	19	11688740	11693164	Pte19g01104	19	11688740	11693164	RCT

Showing 1 to 1 of 1 entries

Previous1Next